X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 80.56 α = 90
b = 97.69 β = 90
c = 106.96 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD PSI PILATUS 6M -- 2012-09-18
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SLS BEAMLINE X06SA 0.97934 SLS X06SA

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.27 46.9 -- -- -- -- -- -- 72224 -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.27 44.556 -- 1.18 -- 72224 3594 95.87 -- 0.1736 0.1719 0.2066 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.27 2.2996 -- 112 2194 0.2935 0.3061 -- 80.0
X Ray Diffraction 2.2996 2.3311 -- 137 2666 0.263 0.3124 -- 97.0
X Ray Diffraction 2.3311 2.3644 -- 141 2652 0.2492 0.3094 -- 98.0
X Ray Diffraction 2.3644 2.3997 -- 141 2678 0.2388 0.2851 -- 97.0
X Ray Diffraction 2.3997 2.4372 -- 144 2756 0.2334 0.2857 -- 98.0
X Ray Diffraction 2.4372 2.4771 -- 142 2690 0.23 0.2884 -- 98.0
X Ray Diffraction 2.4771 2.5198 -- 137 2670 0.2283 0.3134 -- 98.0
X Ray Diffraction 2.5198 2.5656 -- 134 2694 0.2138 0.2804 -- 98.0
X Ray Diffraction 2.5656 2.615 -- 146 2722 0.2088 0.2306 -- 98.0
X Ray Diffraction 2.615 2.6684 -- 137 2641 0.2046 0.2486 -- 96.0
X Ray Diffraction 2.6684 2.7264 -- 142 2652 0.1922 0.2205 -- 96.0
X Ray Diffraction 2.7264 2.7898 -- 141 2666 0.1951 0.2674 -- 96.0
X Ray Diffraction 2.7898 2.8595 -- 141 2676 0.1806 0.1936 -- 97.0
X Ray Diffraction 2.8595 2.9368 -- 141 2678 0.1876 0.2302 -- 98.0
X Ray Diffraction 2.9368 3.0232 -- 138 2712 0.1806 0.2123 -- 98.0
X Ray Diffraction 3.0232 3.1208 -- 144 2722 0.1767 0.2236 -- 98.0
X Ray Diffraction 3.1208 3.2323 -- 141 2696 0.1721 0.2082 -- 97.0
X Ray Diffraction 3.2323 3.3617 -- 142 2661 0.1613 0.2292 -- 97.0
X Ray Diffraction 3.3617 3.5146 -- 133 2631 0.1663 0.1907 -- 95.0
X Ray Diffraction 3.5146 3.6998 -- 134 2507 0.1615 0.2046 -- 92.0
X Ray Diffraction 3.6998 3.9315 -- 135 2597 0.1456 0.1592 -- 94.0
X Ray Diffraction 3.9315 4.2349 -- 139 2615 0.1437 0.1974 -- 95.0
X Ray Diffraction 4.2349 4.6606 -- 136 2602 0.1302 0.1672 -- 95.0
X Ray Diffraction 4.6606 5.3341 -- 137 2594 0.1322 0.1572 -- 94.0
X Ray Diffraction 5.3341 6.7166 -- 136 2630 0.1835 0.1749 -- 95.0
X Ray Diffraction 6.7166 44.5641 -- 143 2628 0.1678 0.1967 -- 96.0
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.006
f_chiral_restr 0.079
f_dihedral_angle_d 15.489
f_angle_d 1.239
f_bond_d 0.011
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 5878
Nucleic Acid Atoms 0
Heterogen Atoms 62
Solvent Atoms 275

Software

Computing
Computing Package Purpose
PHENIX (phenix.refine: 1.8.2_1309) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: 1.8.1_1168) refinement