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X-RAY DIFFRACTION
Materials and Methods page
4JKZ
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 7.5
    Temperature 277.0
    Details 0.2M sodium citrate, 0.1M HEPES, 30% MPD, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 58.26 α = 90
    b = 118.29 β = 90
    c = 49.98 γ = 90
     
    Space Group
    Space Group Name:    C 2 2 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MAR CCD 165 mm
    Collection Date 2012-06-15
     
    Diffraction Radiation
    Monochromator double crystal monochromator
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type BSRF BEAMLINE 3W1A
    Wavelength List 0.9793
    Site BSRF
    Beamline 3W1A
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 1.8
    Resolution(Low) 50
    Number Reflections(All) 16377
    Number Reflections(Observed) 16377
    Percent Possible(Observed) 100.0
    R Merge I(Observed) 0.045
    Redundancy 14.1
     
    High Resolution Shell Details
    Resolution(High) 1.8
    Resolution(Low) 1.83
    Percent Possible(All) 95.7
    R Merge I(Observed) 0.559
    Mean I Over Sigma(Observed) 2.27
    Redundancy 9.7
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method SAD
    reflnsShellList 1.8
    Resolution(Low) 29.572
    Cut-off Sigma(F) 1.37
    Number of Reflections(all) 16377
    Number of Reflections(Observed) 16361
    Number of Reflections(R-Free) 824
    Percent Reflections(Observed) 99.56
    R-Factor(Observed) 0.215
    R-Work 0.2126
    R-Free 0.263
     
    Temperature Factor Modeling
    Anisotropic B[1][1] 18.3899
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 9.6797
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 13.5799
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8
    Shell Resolution(Low) 1.9125
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 2497
    R-Factor(R-Work) 0.2739
    R-Factor(R-Free) 0.3376
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9125
    Shell Resolution(Low) 2.0602
    Number of Reflections(R-Free) 129
    Number of Reflections(R-Work) 2560
    R-Factor(R-Work) 0.2359
    R-Factor(R-Free) 0.292
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0602
    Shell Resolution(Low) 2.2674
    Number of Reflections(R-Free) 131
    Number of Reflections(R-Work) 2572
    R-Factor(R-Work) 0.2064
    R-Factor(R-Free) 0.2638
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2674
    Shell Resolution(Low) 2.5953
    Number of Reflections(R-Free) 149
    Number of Reflections(R-Work) 2572
    R-Factor(R-Work) 0.2052
    R-Factor(R-Free) 0.247
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5953
    Shell Resolution(Low) 3.2692
    Number of Reflections(R-Free) 159
    Number of Reflections(R-Work) 2595
    R-Factor(R-Work) 0.2219
    R-Factor(R-Free) 0.2676
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2692
    Shell Resolution(Low) 29.5762
    Number of Reflections(R-Free) 118
    Number of Reflections(R-Work) 2741
    R-Factor(R-Work) 0.2017
    R-Factor(R-Free) 0.2515
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.004
    f_chiral_restr 0.066
    f_dihedral_angle_d 14.869
    f_angle_d 1.048
    f_bond_d 0.007
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1361
    Nucleic Acid Atoms 0
    Heterogen Atoms 0
    Solvent Atoms 107
     
     
  •   Software and Computing Hide
    Computing
    Data Collection marccd
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution SOLVE
    Structure Refinement PHENIX (phenix.refine: 1.8.2_1309)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.7.3_928)
    model building SOLVE
    data collection marccd