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X-RAY DIFFRACTION
Materials and Methods page
4JIN
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION
    pH 8
    Temperature 293.0
    Details 0.1 M MgCl2, 20% PEG 3350, 0.1 M Tris, pH 8.0, VAPOR DIFFUSION, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 42.55 α = 90
    b = 52.61 β = 109.22
    c = 63.65 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 24-ID-E
    Wavelength List 1.0000
    Site APS
    Beamline 24-ID-E
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 2.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 2.1
    Resolution(Low) 29.25
    Number Reflections(All) 15780
    Percent Possible(Observed) 96.39
    B(Isotropic) From Wilson Plot 46.37
    Redundancy 3.2
     
    High Resolution Shell Details
    Resolution(High) 2.1
    Resolution(Low) 2.26
    Percent Possible(All) 87.9
    R-Sym I(Observed) 0.329
    Redundancy 2.6
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.095
    Resolution(Low) 29.249
    Cut-off Sigma(F) 1.37
    Number of Reflections(all) 15780
    Number of Reflections(Observed) 15211
    Number of Reflections(R-Free) 755
    Percent Reflections(Observed) 96.4
    R-Factor(Observed) 0.1817
    R-Work 0.1788
    R-Free 0.2408
     
    Temperature Factor Modeling
    Mean Isotropic B Value 53.1
    Anisotropic B[1][1] -3.5863
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 2.4565
    Anisotropic B[2][2] -7.0564
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 10.6427
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0953
    Shell Resolution(Low) 2.257
    Number of Reflections(R-Free) 150
    Number of Reflections(R-Work) 2615
    R-Factor(R-Work) 0.2246
    R-Factor(R-Free) 0.2838
    Percent Reflections(Observed) 88.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.257
    Shell Resolution(Low) 2.484
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 2832
    R-Factor(R-Work) 0.2194
    R-Factor(R-Free) 0.2992
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.484
    Shell Resolution(Low) 2.8432
    Number of Reflections(R-Free) 166
    Number of Reflections(R-Work) 2964
    R-Factor(R-Work) 0.2145
    R-Factor(R-Free) 0.2982
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8432
    Shell Resolution(Low) 3.5811
    Number of Reflections(R-Free) 155
    Number of Reflections(R-Work) 2989
    R-Factor(R-Work) 0.1995
    R-Factor(R-Free) 0.293
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.5811
    Shell Resolution(Low) 29.2519
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 3056
    R-Factor(R-Work) 0.1517
    R-Factor(R-Free) 0.1879
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.004
    f_chiral_restr 0.07
    f_dihedral_angle_d 14.614
    f_angle_d 1.064
    f_bond_d 0.008
     
    Coordinate Error
    Luzzati ESD(Observed) 0.3
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2051
    Nucleic Acid Atoms 0
    Heterogen Atoms 20
    Solvent Atoms 87
     
     
  •   Software and Computing Hide
    Computing
    Data Collection ADSC Quantum
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHENIX (phenix.automr)
    Structure Refinement PHENIX (phenix.refine: 1.8.2_1309)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.6_289)
    model building PHENIX version: (phenix.automr)
    data collection ADSC version: Quantum