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X-RAY DIFFRACTION
Materials and Methods page
4JG2
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, SITTING DROP
    pH 7
    Temperature 293.0
    Details 0.1 M MMT buffer, 25% PEG 1500, pH 7, VAPOR DIFFUSION, SITTING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 44.53 α = 90
    b = 51.48 β = 90
    c = 73.35 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MARMOSAIC 300 mm CCD
    Details MIRROR
    Collection Date 2013-01-30
     
    Diffraction Radiation
    Monochromator SI-111 CHANNEL
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 21-ID-G
    Wavelength List 0.97856
    Site APS
    Beamline 21-ID-G
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 1.3
    Resolution(Low) 30
    Number Reflections(All) 42130
    Number Reflections(Observed) 42130
    Percent Possible(Observed) 99.8
    R Merge I(Observed) 0.065
    Redundancy 6.7
     
    High Resolution Shell Details
    Resolution(High) 1.3
    Resolution(Low) 1.32
    Percent Possible(All) 97.9
    R Merge I(Observed) 0.52
    Mean I Over Sigma(Observed) 2.5
    Redundancy 3.8
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method SAD
    reflnsShellList 1.3
    Resolution(Low) 29.89
    Number of Reflections(all) 39942
    Number of Reflections(Observed) 39942
    Number of Reflections(R-Free) 2127
    Percent Reflections(Observed) 99.77
    R-Factor(Observed) 0.12631
    R-Work 0.12434
    R-Free 0.16349
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 15.819
    Anisotropic B[1][1] -0.04
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 0.03
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 0.01
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.3
    Shell Resolution(Low) 1.334
    Number of Reflections(R-Free) 155
    Number of Reflections(R-Work) 2850
    R-Factor(R-Work) 0.219
    R-Factor(R-Free) 0.265
    Percent Reflections(Observed) 98.11
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_sphericity_bonded 11.395
    r_sphericity_free 35.811
    r_rigid_bond_restr 4.95
    r_scbond_it 4.116
    r_mcangle_it 2.312
    r_mcbond_other 1.982
    r_mcbond_it 1.998
    r_gen_planes_other 0.002
    r_gen_planes_refined 0.01
    r_chiral_restr 0.13
    r_dihedral_angle_4_deg 15.808
    r_dihedral_angle_3_deg 9.642
    r_dihedral_angle_2_deg 36.239
    r_dihedral_angle_1_deg 4.949
    r_angle_other_deg 0.868
    r_angle_refined_deg 1.884
    r_bond_other_d 0.001
    r_bond_refined_d 0.017
     
    Coordinate Error
    Luzzati ESD(Observed) 0.1
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1412
    Nucleic Acid Atoms 0
    Heterogen Atoms 0
    Solvent Atoms 312
     
     
  •   Software and Computing Hide
    Computing
    Data Collection Blu Max
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XDS
    Structure Solution PHENIX
    Structure Refinement REFMAC 5.7.0032
     
    Software
    refinement REFMAC version: 5.7.0032
    model building PHENIX
    data collection Blu version: Max