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X-RAY DIFFRACTION
Materials and Methods page
4JD8
  •   Crystallization Hide
    Crystallization Experiments
    pH 6.3
    Temperature 293.0
    Details 1UL, 1mM D(ATGCAT)2 1UL, 3mM RAC-[RU(PHEN)2DPPZ]2CL 6UL, 40mM SPERMINE, 40mM SODIUM CACODYLATE PH 6.3, 10% MPD (V/V), 80 mM KCL, 20 mM BaCL2, 1ML OF 35% MPD, VAPOR DIFFUSION, SITTING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 37.55 α = 90
    b = 37.55 β = 90
    c = 54.37 γ = 120
     
    Space Group
    Space Group Name:    P 31 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector PIXEL
    Type DECTRIS PILATUS 6M
    Collection Date 2012-10-07
     
    Diffraction Radiation
    Monochromator DUAL SI (111)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type DIAMOND BEAMLINE I02
    Wavelength 0.9795
    Site DIAMOND
    Beamline I02
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 1.5
    Resolution(High) 1.16
    Resolution(Low) 32.52
    Number Reflections(Observed) 15712
    Percent Possible(Observed) 98.6
     
    High Resolution Shell Details
    Resolution(High) 1.16
    Resolution(Low) 1.18
    Percent Possible(All) 98.8
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.16
    Resolution(Low) 32.52
    Cut-off Sigma(F) 1.34
    Number of Reflections(all) 15894
    Number of Reflections(Observed) 15678
    Number of Reflections(R-Free) 789
    Percent Reflections(Observed) 98.1
    R-Factor(Observed) 0.139
    R-Work 0.138
    R-Free 0.162
     
    Temperature Factor Modeling
    Data Not Available
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.157
    Shell Resolution(Low) 1.2295
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 2420
    R-Factor(R-Work) 0.2298
    R-Factor(R-Free) 0.2602
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.2295
    Shell Resolution(Low) 1.3244
    Number of Reflections(R-Free) 125
    Number of Reflections(R-Work) 2431
    R-Factor(R-Work) 0.1852
    R-Factor(R-Free) 0.2273
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.3244
    Shell Resolution(Low) 1.4577
    Number of Reflections(R-Free) 134
    Number of Reflections(R-Work) 2440
    R-Factor(R-Work) 0.1332
    R-Factor(R-Free) 0.1811
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.4577
    Shell Resolution(Low) 1.6687
    Number of Reflections(R-Free) 128
    Number of Reflections(R-Work) 2488
    R-Factor(R-Work) 0.105
    R-Factor(R-Free) 0.1515
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6687
    Shell Resolution(Low) 2.1023
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 2505
    R-Factor(R-Work) 0.123
    R-Factor(R-Free) 0.1346
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1023
    Shell Resolution(Low) 32.5319
    Number of Reflections(R-Free) 123
    Number of Reflections(R-Work) 2605
    R-Factor(R-Work) 0.1404
    R-Factor(R-Free) 0.1607
    Percent Reflections(Observed) 97.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.029
    f_chiral_restr 0.091
    f_dihedral_angle_d 32.509
    f_angle_d 2.966
    f_bond_d 0.015
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 0
    Nucleic Acid Atoms 240
    Heterogen Atoms 103
    Solvent Atoms 95
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) MOSFLM
    Data Reduction (data scaling) AIMLESS
    Structure Solution PHASER
    Structure Refinement PHENIX (PHENIX.REFINE: 1.8.1_1168)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.8.1_1168)
    model building PHASER
    data collection GDA