X-RAY DIFFRACTION Experimental Data & Validation


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Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
pH 6.6
Temperature 289.0
Details 0.2 M Ammonium tartrate dibasic, 20% w/v Polyethylene glycol 3350, pH 6.6, VAPOR DIFFUSION, SITTING DROP, temperature 289K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 72.01 α = 90
b = 48.71 β = 97.89
c = 194.29 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 120
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315 Mirrors 2008-01-12
Diffraction Radiation
Monochromator Protocol
Graphics SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 23-ID-B 1 APS 23-ID-B

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.73 50 89.0 -- -- -- -- -- 140395 12.64 1.65 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.73 48.11 -- 1.34 -- 125850 6346 89.7 -- 0.184 0.182 0.221 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.73 1.7491 -- 158 3267 0.2947 0.3182 -- 74.0
X Ray Diffraction 1.7491 1.7697 -- 203 3522 0.28 0.349 -- 80.0
X Ray Diffraction 1.7697 1.7913 -- 174 3614 0.2557 0.3108 -- 82.0
X Ray Diffraction 1.7913 1.8139 -- 196 3654 0.2402 0.2977 -- 82.0
X Ray Diffraction 1.8139 1.8378 -- 180 3698 0.2238 0.2595 -- 84.0
X Ray Diffraction 1.8378 1.863 -- 199 3628 0.2171 0.2592 -- 83.0
X Ray Diffraction 1.863 1.8896 -- 186 3744 0.2052 0.248 -- 84.0
X Ray Diffraction 1.8896 1.9178 -- 196 3663 0.1991 0.2428 -- 84.0
X Ray Diffraction 1.9178 1.9478 -- 219 3719 0.1933 0.2502 -- 83.0
X Ray Diffraction 1.9478 1.9797 -- 204 3736 0.1905 0.2529 -- 86.0
X Ray Diffraction 1.9797 2.0138 -- 214 3726 0.1836 0.2291 -- 85.0
X Ray Diffraction 2.0138 2.0505 -- 189 3787 0.1825 0.2108 -- 85.0
X Ray Diffraction 2.0505 2.0899 -- 209 3768 0.1744 0.2234 -- 86.0
X Ray Diffraction 2.0899 2.1326 -- 187 3867 0.1701 0.2166 -- 87.0
X Ray Diffraction 2.1326 2.1789 -- 203 3882 0.1797 0.1985 -- 87.0
X Ray Diffraction 2.1789 2.2296 -- 196 3946 0.1784 0.2276 -- 88.0
X Ray Diffraction 2.2296 2.2854 -- 207 3934 0.1836 0.2397 -- 90.0
X Ray Diffraction 2.2854 2.3472 -- 219 4029 0.1772 0.233 -- 91.0
X Ray Diffraction 2.3472 2.4162 -- 226 4120 0.1737 0.227 -- 92.0
X Ray Diffraction 2.4162 2.4942 -- 234 4087 0.1848 0.2371 -- 93.0
X Ray Diffraction 2.4942 2.5834 -- 218 4241 0.1844 0.2303 -- 95.0
X Ray Diffraction 2.5834 2.6868 -- 238 4219 0.1829 0.2391 -- 95.0
X Ray Diffraction 2.6868 2.8091 -- 250 4285 0.1885 0.2164 -- 97.0
X Ray Diffraction 2.8091 2.9571 -- 241 4350 0.1843 0.2313 -- 98.0
X Ray Diffraction 2.9571 3.1424 -- 237 4382 0.1839 0.2214 -- 99.0
X Ray Diffraction 3.1424 3.3849 -- 250 4443 0.1801 0.1902 -- 99.0
X Ray Diffraction 3.3849 3.7255 -- 213 4485 0.1725 0.1917 -- 99.0
X Ray Diffraction 3.7255 4.2643 -- 248 4465 0.1545 0.1955 -- 100.0
X Ray Diffraction 4.2643 5.3714 -- 226 4564 0.1555 0.1878 -- 100.0
X Ray Diffraction 5.3714 48.1329 -- 226 4679 0.188 0.2156 -- 100.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] 0.7326
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] -0.4128
Anisotropic B[2][2] 0.0812
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -0.8138
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.005
f_chiral_restr 0.083
f_dihedral_angle_d 12.38
f_angle_d 1.277
f_bond_d 0.006
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 10568
Nucleic Acid Atoms 0
Heterogen Atoms 177
Solvent Atoms 826

Software

Computing
Computing Package Purpose
HKL-2000 Data Collection
HKL-2000 Data Reduction (intensity integration)
SCALEPACK Data Reduction (data scaling)
MLPHARE Structure Solution
PHENIX (PHENIX.REFINE: 1.7_650) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: 1.7.2_869) refinement
MLPHARE model building
HKL-2000 data collection