X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
pH 7
Temperature 289.0
Details 0.2 M Sodium iodide, 20% w/v Polyethylene glycol 3350, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 289K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 72.01 α = 90
b = 48.63 β = 97.57
c = 193.66 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 120
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315 mirrors 2008-01-12
Diffraction Radiation
Monochromator Protocol
Graphite SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 23-ID-B 1 APS 23-ID-B

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.83 50 -- -- -- -- -- -- 90986 6.34 0.22 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.833 44.803 -- 1.33 -- 90962 4291 77.37 -- 0.2368 0.2341 0.289 5%
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.833 1.8537 -- 1 2 0.9066 0.9832 -- 1.0
X Ray Diffraction 1.8537 1.8755 -- 41 929 0.6374 0.6447 -- 25.0
X Ray Diffraction 1.8755 1.8983 -- 32 539 0.5747 0.5361 -- 29.0
X Ray Diffraction 1.8983 1.9224 -- 65 1075 0.4807 0.5038 -- 34.0
X Ray Diffraction 1.9224 1.9477 -- 66 1217 0.4488 0.4693 -- 33.0
X Ray Diffraction 1.9477 1.9744 -- 93 1688 0.4587 0.4686 -- 46.0
X Ray Diffraction 1.9744 2.0026 -- 102 1894 0.4464 0.4373 -- 52.0
X Ray Diffraction 2.0026 2.0325 -- 122 2291 0.425 0.4204 -- 62.0
X Ray Diffraction 2.0325 2.0642 -- 133 2448 0.4326 0.4422 -- 67.0
X Ray Diffraction 2.0642 2.0981 -- 132 2742 0.4123 0.361 -- 74.0
X Ray Diffraction 2.0981 2.1342 -- 140 2908 0.407 0.4083 -- 78.0
X Ray Diffraction 2.1342 2.173 -- 179 3021 0.4005 0.4255 -- 82.0
X Ray Diffraction 2.173 2.2148 -- 158 3212 0.3875 0.4217 -- 87.0
X Ray Diffraction 2.2148 2.26 -- 170 3326 0.3849 0.3812 -- 90.0
X Ray Diffraction 2.26 2.3092 -- 170 3487 0.3578 0.414 -- 93.0
X Ray Diffraction 2.3092 2.3629 -- 199 3546 0.3456 0.3699 -- 97.0
X Ray Diffraction 2.3629 2.422 -- 202 3693 0.3294 0.4002 -- 98.0
X Ray Diffraction 2.422 2.4875 -- 236 3623 0.3231 0.3982 -- 99.0
X Ray Diffraction 2.4875 2.5606 -- 199 3704 0.3177 0.3676 -- 99.0
X Ray Diffraction 2.5606 2.6433 -- 189 3613 0.3019 0.389 -- 99.0
X Ray Diffraction 2.6433 2.7378 -- 181 3700 0.2841 0.3439 -- 99.0
X Ray Diffraction 2.7378 2.8473 -- 217 3690 0.2707 0.3699 -- 99.0
X Ray Diffraction 2.8473 2.9769 -- 202 3681 0.264 0.3256 -- 99.0
X Ray Diffraction 2.9769 3.1338 -- 173 3735 0.2502 0.2795 -- 99.0
X Ray Diffraction 3.1338 3.3301 -- 169 3735 0.2311 0.3416 -- 99.0
X Ray Diffraction 3.3301 3.5871 -- 206 3718 0.2163 0.2535 -- 99.0
X Ray Diffraction 3.5871 3.9479 -- 185 3752 0.1984 0.2579 -- 99.0
X Ray Diffraction 3.9479 4.5187 -- 190 3768 0.1649 0.2341 -- 99.0
X Ray Diffraction 4.5187 5.6913 -- 201 3763 0.1746 0.2211 -- 99.0
X Ray Diffraction 5.6913 44.803 -- 204 3905 0.1664 0.2177 -- 99.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] 1.5629
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] -5.7934
Anisotropic B[2][2] -1.5784
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 0.0154
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.005
f_chiral_restr 0.089
f_dihedral_angle_d 17.337
f_angle_d 1.354
f_bond_d 0.01
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 10582
Nucleic Acid Atoms 0
Heterogen Atoms 174
Solvent Atoms 185

Software

Computing
Computing Package Purpose
HKL-2000 Data Collection
SCALEPACK Data Reduction (data scaling)
MLPHARE Structure Solution
PHENIX (phenix.refine: 1.7.2_869) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: 1.7.2_869) refinement
MLPHARE model building
HKL-2000 data collection