X-RAY DIFFRACTION Experimental Data & Validation


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Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 8
Temperature 298.0
Details 50mM Tris, 2M Ammonium sulfate, 1% PEG400, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 138.73 α = 90
b = 219.73 β = 90
c = 60.65 γ = 90
Symmetry
Space Group P 21 21 2

Diffraction

Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD MARMOSAIC 225 mm CCD -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SLS BEAMLINE X10SA 0.979 SLS X10SA

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.8 50 0.997 0.072 -- -- -- 46866 46715 0.0 0.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.8 2.9 97.4 -- 0.525 2.6 3.9 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.8 46.711 -- 1.34 46866 46715 2338 99.71 -- 0.2026 0.1994 0.2626 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.7962 2.8533 -- 132 2463 0.2717 0.3434 -- 96.0
X Ray Diffraction 2.8533 2.9153 -- 135 2571 0.2431 0.333 -- 100.0
X Ray Diffraction 2.9153 2.9831 -- 134 2555 0.245 0.3709 -- 100.0
X Ray Diffraction 2.9831 3.0577 -- 138 2597 0.232 0.3137 -- 100.0
X Ray Diffraction 3.0577 3.1403 -- 136 2583 0.2256 0.2967 -- 100.0
X Ray Diffraction 3.1403 3.2327 -- 135 2595 0.2388 0.3412 -- 100.0
X Ray Diffraction 3.2327 3.337 -- 136 2579 0.2204 0.3307 -- 100.0
X Ray Diffraction 3.337 3.4563 -- 136 2578 0.2122 0.2604 -- 100.0
X Ray Diffraction 3.4563 3.5946 -- 137 2599 0.2004 0.2979 -- 100.0
X Ray Diffraction 3.5946 3.7581 -- 138 2610 0.1919 0.2485 -- 100.0
X Ray Diffraction 3.7581 3.9562 -- 136 2577 0.1729 0.2496 -- 100.0
X Ray Diffraction 3.9562 4.2039 -- 137 2634 0.1687 0.231 -- 100.0
X Ray Diffraction 4.2039 4.5282 -- 139 2612 0.1542 0.1939 -- 100.0
X Ray Diffraction 4.5282 4.9835 -- 139 2644 0.1547 0.2215 -- 100.0
X Ray Diffraction 4.9835 5.7035 -- 139 2652 0.1936 0.2651 -- 100.0
X Ray Diffraction 5.7035 7.1816 -- 142 2692 0.2353 0.2662 -- 100.0
X Ray Diffraction 7.1816 46.7174 -- 149 2836 0.2118 0.2446 -- 100.0
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.007
f_chiral_restr 0.069
f_dihedral_angle_d 13.561
f_angle_d 1.245
f_bond_d 0.01
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 11870
Nucleic Acid Atoms 0
Heterogen Atoms 85
Solvent Atoms 128

Software

Computing
Computing Package Purpose
PHENIX (phenix.refine: 1.8.1_1168) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: 1.8.1_1168) refinement