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X-RAY DIFFRACTION
Materials and Methods page
4J9Z
  •   Crystallization Hide
    Crystallization Experiments
    Method vapor diffusion, hanging drop
    pH 5.6
    Temperature 298.0
    Details 1.25 M lithium sulfate, 0.5 M ammonium sulfate, 0.1 M sodium citrate, pH 5.6, vapor diffusion, hanging drop, temperature 298.0K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 77.2 α = 90
    b = 66.85 β = 93.81
    c = 64.83 γ = 90
     
    Space Group
    Space Group Name:    C 1 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 270
    Collection Date 2012-05-24
     
    Diffraction Radiation
    Monochromator Si(111) channel cut
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type NSLS BEAMLINE X6A
    Wavelength List 1.0781
    Site NSLS
    Beamline X6A
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 1.66
    Resolution(Low) 27.79
    Number Reflections(All) 38789
    Number Reflections(Observed) 38789
    Percent Possible(Observed) 99.6
    Redundancy 5.2
     
    High Resolution Shell Details
    Resolution(High) 1.66
    Resolution(Low) 1.7
    Percent Possible(All) 99.7
    R Merge I(Observed) 0.733
    Mean I Over Sigma(Observed) 1.1
    R-Sym I(Observed) 0.733
    Redundancy 5.1
    Number Unique Reflections(All) 2884
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.66
    Resolution(Low) 27.79
    Cut-off Sigma(F) 1.36
    Number of Reflections(Observed) 38789
    Number of Reflections(R-Free) 1905
    Percent Reflections(Observed) 99.63
    R-Factor(Observed) 0.1922
    R-Work 0.1907
    R-Free 0.221
     
    Temperature Factor Modeling
    Mean Isotropic B Value 40.7742
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.66
    Shell Resolution(Low) 1.7015
    Number of Reflections(R-Free) 156
    Number of Reflections(R-Work) 2615
    R-Factor(R-Work) 0.2576
    R-Factor(R-Free) 0.311
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7015
    Shell Resolution(Low) 1.7475
    Number of Reflections(R-Free) 132
    Number of Reflections(R-Work) 2619
    R-Factor(R-Work) 0.2501
    R-Factor(R-Free) 0.3143
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7475
    Shell Resolution(Low) 1.7989
    Number of Reflections(R-Free) 126
    Number of Reflections(R-Work) 2627
    R-Factor(R-Work) 0.238
    R-Factor(R-Free) 0.3178
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7989
    Shell Resolution(Low) 1.857
    Number of Reflections(R-Free) 123
    Number of Reflections(R-Work) 2622
    R-Factor(R-Work) 0.2208
    R-Factor(R-Free) 0.2414
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.857
    Shell Resolution(Low) 1.9233
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 2620
    R-Factor(R-Work) 0.2112
    R-Factor(R-Free) 0.2364
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9233
    Shell Resolution(Low) 2.0003
    Number of Reflections(R-Free) 148
    Number of Reflections(R-Work) 2590
    R-Factor(R-Work) 0.2003
    R-Factor(R-Free) 0.2743
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0003
    Shell Resolution(Low) 2.0913
    Number of Reflections(R-Free) 121
    Number of Reflections(R-Work) 2661
    R-Factor(R-Work) 0.1998
    R-Factor(R-Free) 0.2098
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0913
    Shell Resolution(Low) 2.2015
    Number of Reflections(R-Free) 129
    Number of Reflections(R-Work) 2624
    R-Factor(R-Work) 0.1837
    R-Factor(R-Free) 0.2165
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2015
    Shell Resolution(Low) 2.3394
    Number of Reflections(R-Free) 152
    Number of Reflections(R-Work) 2640
    R-Factor(R-Work) 0.1834
    R-Factor(R-Free) 0.2111
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3394
    Shell Resolution(Low) 2.5199
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 2626
    R-Factor(R-Work) 0.1945
    R-Factor(R-Free) 0.2291
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5199
    Shell Resolution(Low) 2.7733
    Number of Reflections(R-Free) 131
    Number of Reflections(R-Work) 2646
    R-Factor(R-Work) 0.1949
    R-Factor(R-Free) 0.2441
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7733
    Shell Resolution(Low) 3.1741
    Number of Reflections(R-Free) 118
    Number of Reflections(R-Work) 2682
    R-Factor(R-Work) 0.1901
    R-Factor(R-Free) 0.2052
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1741
    Shell Resolution(Low) 3.9972
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 2657
    R-Factor(R-Work) 0.1659
    R-Factor(R-Free) 0.224
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.9972
    Shell Resolution(Low) 27.7935
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 2655
    R-Factor(R-Work) 0.1865
    R-Factor(R-Free) 0.1837
    Percent Reflections(Observed) 98.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_dihedral_angle_d 14.937
    f_plane_restr 0.005
    f_chiral_restr 0.079
    f_angle_d 1.161
    f_bond_d 0.007
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1941
    Nucleic Acid Atoms 0
    Heterogen Atoms 42
    Solvent Atoms 156
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (data scaling) SCALA
    Structure Refinement PHENIX (phenix.refine: 1.8.1_1168)
     
    Software
    data extraction pdb_extract version: 3.11
    refinement phenix
    data reduction SCALA version: 3.3.20