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X-RAY DIFFRACTION
Materials and Methods page
4J9Y
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 5.6
    Temperature 298.0
    Details 1.25 M lithium sulfate, 0.5 M ammonium sulfate, 0.1 M sodium citrate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 77.63 α = 90
    b = 66.82 β = 94.48
    c = 64.83 γ = 90
     
    Space Group
    Space Group Name:    C 1 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315r
    Collection Date 2011-12-08
     
    Diffraction Radiation
    Monochromator double crystal Si(111)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ALS BEAMLINE 12.3.1
    Wavelength List 1.12
    Site ALS
    Beamline 12.3.1
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 1.51
    Resolution(Low) 38.88
    Number Reflections(All) 49769
    Number Reflections(Observed) 49769
    Percent Possible(Observed) 96.3
    Redundancy 5.3
     
    High Resolution Shell Details
    Resolution(High) 1.51
    Resolution(Low) 1.55
    Percent Possible(All) 94.0
    R Merge I(Observed) 0.682
    Mean I Over Sigma(Observed) 1.1
    R-Sym I(Observed) 0.682
    Redundancy 5.3
    Number Unique Reflections(All) 3595
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.51
    Resolution(Low) 38.879
    Cut-off Sigma(F) 1.36
    Number of Reflections(Observed) 49765
    Number of Reflections(R-Free) 2519
    Percent Reflections(Observed) 96.0
    R-Factor(Observed) 0.1844
    R-Work 0.1827
    R-Free 0.2163
     
    Temperature Factor Modeling
    Mean Isotropic B Value 30.2014
    Anisotropic B[1][1] -5.1467
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] -3.8131
    Anisotropic B[2][2] 5.8846
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.7379
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.51
    Shell Resolution(Low) 1.539
    Number of Reflections(R-Free) 158
    Number of Reflections(R-Work) 2502
    R-Factor(R-Work) 0.3127
    R-Factor(R-Free) 0.3605
    Percent Reflections(Observed) 94.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.539
    Shell Resolution(Low) 1.5705
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 2562
    R-Factor(R-Work) 0.2813
    R-Factor(R-Free) 0.3146
    Percent Reflections(Observed) 94.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.5705
    Shell Resolution(Low) 1.6046
    Number of Reflections(R-Free) 150
    Number of Reflections(R-Work) 2576
    R-Factor(R-Work) 0.2488
    R-Factor(R-Free) 0.2764
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6046
    Shell Resolution(Low) 1.6419
    Number of Reflections(R-Free) 148
    Number of Reflections(R-Work) 2543
    R-Factor(R-Work) 0.2455
    R-Factor(R-Free) 0.2693
    Percent Reflections(Observed) 94.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6419
    Shell Resolution(Low) 1.683
    Number of Reflections(R-Free) 157
    Number of Reflections(R-Work) 2541
    R-Factor(R-Work) 0.2318
    R-Factor(R-Free) 0.2431
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.683
    Shell Resolution(Low) 1.7285
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 2603
    R-Factor(R-Work) 0.239
    R-Factor(R-Free) 0.3093
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7285
    Shell Resolution(Low) 1.7794
    Number of Reflections(R-Free) 130
    Number of Reflections(R-Work) 2604
    R-Factor(R-Work) 0.2168
    R-Factor(R-Free) 0.2394
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7794
    Shell Resolution(Low) 1.8368
    Number of Reflections(R-Free) 134
    Number of Reflections(R-Work) 2641
    R-Factor(R-Work) 0.2086
    R-Factor(R-Free) 0.2111
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8368
    Shell Resolution(Low) 1.9024
    Number of Reflections(R-Free) 119
    Number of Reflections(R-Work) 2657
    R-Factor(R-Work) 0.1933
    R-Factor(R-Free) 0.2533
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9024
    Shell Resolution(Low) 1.9786
    Number of Reflections(R-Free) 158
    Number of Reflections(R-Work) 2595
    R-Factor(R-Work) 0.1804
    R-Factor(R-Free) 0.2154
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9786
    Shell Resolution(Low) 2.0687
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2640
    R-Factor(R-Work) 0.1733
    R-Factor(R-Free) 0.1967
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0687
    Shell Resolution(Low) 2.1777
    Number of Reflections(R-Free) 110
    Number of Reflections(R-Work) 2671
    R-Factor(R-Work) 0.1647
    R-Factor(R-Free) 0.2024
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1777
    Shell Resolution(Low) 2.3141
    Number of Reflections(R-Free) 154
    Number of Reflections(R-Work) 2650
    R-Factor(R-Work) 0.165
    R-Factor(R-Free) 0.2013
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3141
    Shell Resolution(Low) 2.4928
    Number of Reflections(R-Free) 151
    Number of Reflections(R-Work) 2673
    R-Factor(R-Work) 0.1594
    R-Factor(R-Free) 0.1878
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4928
    Shell Resolution(Low) 2.7436
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2696
    R-Factor(R-Work) 0.1609
    R-Factor(R-Free) 0.1961
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7436
    Shell Resolution(Low) 3.1404
    Number of Reflections(R-Free) 114
    Number of Reflections(R-Work) 2726
    R-Factor(R-Work) 0.1716
    R-Factor(R-Free) 0.2257
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1404
    Shell Resolution(Low) 3.956
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 2731
    R-Factor(R-Work) 0.1689
    R-Factor(R-Free) 0.2141
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.956
    Shell Resolution(Low) 38.8923
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 2635
    R-Factor(R-Work) 0.1886
    R-Factor(R-Free) 0.1988
    Percent Reflections(Observed) 94.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_dihedral_angle_d 12.892
    f_plane_restr 0.006
    f_chiral_restr 0.075
    f_angle_d 1.289
    f_bond_d 0.011
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1874
    Nucleic Acid Atoms 0
    Heterogen Atoms 23
    Solvent Atoms 321
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (data scaling) SCALA
    Structure Refinement PHENIX (phenix.refine: 1.7.3_928)
     
    Software
    data extraction pdb_extract version: 3.11
    refinement phenix
    data reduction SCALA version: 3.3.20