X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 64.88 α = 90
b = 62.63 β = 93.64
c = 77.26 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315 -- --
Diffraction Radiation
Monochromator Protocol
Cryogenically-cooled single crystal Si(220) side bounce SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 24-ID-E -- APS 24-ID-E

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.89 50 99.8 -- -- -- -- 73818 49039 -- 2.4 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.895 48.104 -- 1.35 54368 48995 2017 99.38 -- 0.1687 0.167 0.2094 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.895 1.9424 -- 138 3081 0.2513 0.3053 -- 93.0
X Ray Diffraction 1.9424 1.9949 -- 144 3363 0.2074 0.2589 -- 100.0
X Ray Diffraction 1.9949 2.0536 -- 138 3340 0.1935 0.2458 -- 100.0
X Ray Diffraction 2.0536 2.1199 -- 152 3376 0.1802 0.2289 -- 100.0
X Ray Diffraction 2.1199 2.1956 -- 137 3358 0.1768 0.2155 -- 100.0
X Ray Diffraction 2.1956 2.2835 -- 143 3363 0.213 0.2929 -- 100.0
X Ray Diffraction 2.2835 2.3875 -- 149 3355 0.1867 0.2471 -- 100.0
X Ray Diffraction 2.3875 2.5133 -- 142 3373 0.1919 0.2455 -- 100.0
X Ray Diffraction 2.5133 2.6708 -- 141 3370 0.1896 0.2648 -- 100.0
X Ray Diffraction 2.6708 2.877 -- 145 3386 0.1821 0.24 -- 100.0
X Ray Diffraction 2.877 3.1664 -- 145 3364 0.1652 0.2065 -- 100.0
X Ray Diffraction 3.1664 3.6245 -- 144 3416 0.1491 0.1868 -- 100.0
X Ray Diffraction 3.6245 4.5659 -- 149 3398 0.1294 0.1488 -- 100.0
X Ray Diffraction 4.5659 48.1195 -- 150 3435 0.1474 0.176 -- 99.0
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.007
f_chiral_restr 0.109
f_dihedral_angle_d 12.977
f_angle_d 1.475
f_bond_d 0.011
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 4953
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 469

Software

Computing
Computing Package Purpose
ADSC Data Collection
PHENIX (phenix.refine: 1.8_1069) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: 1.8_1069) refinement
ADSC data collection