X-RAY DIFFRACTION Experimental Data & Validation


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Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 49.74 α = 90
b = 81.96 β = 90
c = 87.23 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315 -- --
Diffraction Radiation
Monochromator Protocol
Cryogenically-cooled single crystal Si(220) side bounce SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 24-ID-E -- APS 24-ID-E

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.88 77.11 98.8 -- -- -- -- 33643 29390 -- 2.4 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.878 59.729 -- 1.35 33643 29390 1992 98.5 -- 0.1789 0.1762 0.2172 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.878 1.9246 -- 136 1913 0.2218 0.2434 -- 98.0
X Ray Diffraction 1.9246 1.9767 -- 137 1915 0.208 0.246 -- 98.0
X Ray Diffraction 1.9767 2.0348 -- 145 1896 0.1972 0.2319 -- 97.0
X Ray Diffraction 2.0348 2.1005 -- 143 1952 0.1814 0.2465 -- 100.0
X Ray Diffraction 2.1005 2.1756 -- 141 1966 0.1891 0.2411 -- 100.0
X Ray Diffraction 2.1756 2.2627 -- 150 1933 0.1791 0.2112 -- 99.0
X Ray Diffraction 2.2627 2.3657 -- 132 1955 0.1743 0.2341 -- 98.0
X Ray Diffraction 2.3657 2.4904 -- 154 1901 0.1904 0.2486 -- 97.0
X Ray Diffraction 2.4904 2.6464 -- 136 1965 0.1896 0.2457 -- 100.0
X Ray Diffraction 2.6464 2.8508 -- 141 1956 0.1826 0.2439 -- 99.0
X Ray Diffraction 2.8508 3.1376 -- 146 1965 0.1685 0.2039 -- 98.0
X Ray Diffraction 3.1376 3.5916 -- 137 1991 0.1573 0.2093 -- 99.0
X Ray Diffraction 3.5916 4.5248 -- 146 1989 0.1512 0.1878 -- 98.0
X Ray Diffraction 4.5248 59.7592 -- 148 2101 0.1937 0.2114 -- 98.0
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.005
f_chiral_restr 0.1
f_dihedral_angle_d 14.159
f_angle_d 1.356
f_bond_d 0.008
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2457
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 163

Software

Computing
Computing Package Purpose
ADSC Data Collection
PHENIX (phenix.refine: 1.8_1069) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: 1.8_1069) refinement
ADSC data collection