X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 42.55 α = 81.46
b = 46.15 β = 81.96
c = 84.3 γ = 69.47
Symmetry
Space Group P 1

Diffraction

Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315 -- --
Diffraction Radiation
Monochromator Protocol
Cryogenically-cooled single crystal Si(220) side bounce SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 24-ID-E -- APS 24-ID-E

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.47 50 93.5 -- -- -- -- 93131 93130 -- 2.5 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.473 39.952 -- 1.97 93131 93112 1990 93.1 -- 0.1884 0.188 0.2079 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.473 1.5099 -- 139 6092 0.2689 0.3055 -- 88.0
X Ray Diffraction 1.5099 1.5507 -- 140 6590 0.2328 0.2762 -- 94.0
X Ray Diffraction 1.5507 1.5963 -- 142 6636 0.2156 0.235 -- 95.0
X Ray Diffraction 1.5963 1.6478 -- 144 6653 0.1969 0.2661 -- 95.0
X Ray Diffraction 1.6478 1.7067 -- 142 6660 0.1876 0.2016 -- 95.0
X Ray Diffraction 1.7067 1.7751 -- 152 6696 0.1807 0.2 -- 95.0
X Ray Diffraction 1.7751 1.8559 -- 135 6670 0.1748 0.1816 -- 96.0
X Ray Diffraction 1.8559 1.9537 -- 147 6698 0.1734 0.2225 -- 96.0
X Ray Diffraction 1.9537 2.0761 -- 150 6674 0.1792 0.1981 -- 96.0
X Ray Diffraction 2.0761 2.2364 -- 141 6700 0.1805 0.2026 -- 96.0
X Ray Diffraction 2.2364 2.4614 -- 143 6735 0.1813 0.2132 -- 96.0
X Ray Diffraction 2.4614 2.8175 -- 161 6705 0.1921 0.2231 -- 95.0
X Ray Diffraction 2.8175 3.5494 -- 137 6291 0.1824 0.1606 -- 90.0
X Ray Diffraction 3.5494 39.9667 -- 117 5322 0.185 0.201 -- 76.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] 3.8693
Anisotropic B[1][2] -1.5973
Anisotropic B[1][3] 0.1095
Anisotropic B[2][2] -1.9487
Anisotropic B[2][3] 2.1658
Anisotropic B[3][3] -1.9207
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.006
f_chiral_restr 0.082
f_dihedral_angle_d 12.045
f_angle_d 1.171
f_bond_d 0.006
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 4843
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 786

Software

Computing
Computing Package Purpose
ADSC Data Collection
PHENIX (phenix.refine: 1.7.3_928) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: 1.7.3_928) refinement
ADSC data collection