X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 49.06 α = 88.83
b = 48.89 β = 89.15
c = 76.03 γ = 62.91
Symmetry
Space Group P 1

Diffraction

Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315 -- --
Diffraction Radiation
Monochromator Protocol
Cryogenically-cooled single crystal Si(220) side bounce SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 24-ID-E -- APS 24-ID-E

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.46 76.01 95.9 -- -- -- -- 157300 102387 -- 2.2 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.461 43.674 -- 1.96 135896 102352 2020 93.89 -- 0.1695 0.1686 0.2122 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.461 1.4976 -- 92 5319 0.2853 0.3754 -- 70.0
X Ray Diffraction 1.4976 1.5381 -- 154 7199 0.2759 0.3296 -- 94.0
X Ray Diffraction 1.5381 1.5833 -- 134 7277 0.2293 0.3023 -- 95.0
X Ray Diffraction 1.5833 1.6344 -- 162 7263 0.2238 0.3249 -- 95.0
X Ray Diffraction 1.6344 1.6928 -- 142 7265 0.2273 0.3236 -- 95.0
X Ray Diffraction 1.6928 1.7606 -- 133 7361 0.1717 0.2525 -- 96.0
X Ray Diffraction 1.7606 1.8407 -- 149 7275 0.1572 0.2281 -- 96.0
X Ray Diffraction 1.8407 1.9378 -- 154 7350 0.1549 0.1987 -- 96.0
X Ray Diffraction 1.9378 2.0592 -- 150 7360 0.1539 0.2258 -- 97.0
X Ray Diffraction 2.0592 2.2182 -- 157 7362 0.1586 0.196 -- 97.0
X Ray Diffraction 2.2182 2.4414 -- 146 7422 0.1581 0.2205 -- 97.0
X Ray Diffraction 2.4414 2.7946 -- 160 7426 0.1598 0.2122 -- 98.0
X Ray Diffraction 2.7946 3.5207 -- 150 7428 0.1493 0.1775 -- 97.0
X Ray Diffraction 3.5207 43.6932 -- 137 7025 0.1665 0.1801 -- 92.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] 0.4867
Anisotropic B[1][2] 2.1337
Anisotropic B[1][3] 1.4349
Anisotropic B[2][2] -2.708
Anisotropic B[2][3] 2.2599
Anisotropic B[3][3] 2.2213
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.005
f_chiral_restr 0.083
f_dihedral_angle_d 13.373
f_angle_d 1.12
f_bond_d 0.006
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 4874
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 535

Software

Computing
Computing Package Purpose
PHENIX (phenix.refine: 1.7.3_928) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: 1.7.3_928) refinement