X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 48.66 α = 89.75
b = 48.76 β = 89.63
c = 75.21 γ = 63.95
Symmetry
Space Group P 1

Diffraction

Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315 -- --
Diffraction Radiation
Monochromator Protocol
Cryogenically-cooled single crystal Si(220) side bounce SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 24-ID-E -- APS 24-ID-E

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.74 50 95.9 -- -- -- -- 60481 60453 -- 3.4 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.745 37.713 -- 1.98 60481 60453 1984 95.64 -- 0.1597 0.1584 0.1983 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.745 1.7886 -- 132 3987 0.2221 0.2412 -- 90.0
X Ray Diffraction 1.7886 1.8369 -- 122 4173 0.1956 0.24 -- 96.0
X Ray Diffraction 1.8369 1.891 -- 147 4197 0.1747 0.2241 -- 96.0
X Ray Diffraction 1.891 1.952 -- 142 4239 0.1595 0.1908 -- 96.0
X Ray Diffraction 1.952 2.0218 -- 130 4184 0.1486 0.2204 -- 96.0
X Ray Diffraction 2.0218 2.1027 -- 168 4184 0.1488 0.1674 -- 97.0
X Ray Diffraction 2.1027 2.1984 -- 154 4245 0.1484 0.2025 -- 97.0
X Ray Diffraction 2.1984 2.3143 -- 124 4276 0.1563 0.1787 -- 97.0
X Ray Diffraction 2.3143 2.4593 -- 151 4244 0.1536 0.2196 -- 97.0
X Ray Diffraction 2.4593 2.6491 -- 119 4232 0.16 0.2261 -- 98.0
X Ray Diffraction 2.6491 2.9156 -- 160 4270 0.1508 0.1896 -- 98.0
X Ray Diffraction 2.9156 3.3373 -- 141 4236 0.1502 0.1673 -- 97.0
X Ray Diffraction 3.3373 4.2038 -- 167 4040 0.1458 0.1857 -- 93.0
X Ray Diffraction 4.2038 37.7215 -- 127 3962 0.1725 0.2179 -- 90.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] 0.6606
Anisotropic B[1][2] 2.1321
Anisotropic B[1][3] 5.0794
Anisotropic B[2][2] -1.4218
Anisotropic B[2][3] 3.34
Anisotropic B[3][3] 0.7612
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.006
f_chiral_restr 0.092
f_dihedral_angle_d 12.477
f_angle_d 1.178
f_bond_d 0.007
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 4873
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 588

Software

Computing
Computing Package Purpose
ADSC Data Collection
PHENIX (phenix.refine: 1.7.3_928) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: 1.7.3_928) refinement
ADSC data collection