X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 75.68 α = 90
b = 50.94 β = 90.24
c = 82.42 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315 -- --
Diffraction Radiation
Monochromator Protocol
Cryogenically-cooled single crystal Si(220) side bounce SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 24-ID-E -- APS 24-ID-E

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.76 75.68 97.8 -- -- -- -- -- 60204 -- 8.4 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.756 36.129 -- 1.33 61347 60204 1632 95.58 -- 0.2032 0.2018 0.2451 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.756 1.7998 -- 127 3933 0.2549 0.3622 -- 92.0
X Ray Diffraction 1.7998 1.8485 -- 144 4138 0.2382 0.2835 -- 96.0
X Ray Diffraction 1.8485 1.9029 -- 147 4197 0.2197 0.2611 -- 97.0
X Ray Diffraction 1.9029 1.9643 -- 152 4169 0.2127 0.253 -- 97.0
X Ray Diffraction 1.9643 2.0345 -- 129 4174 0.2146 0.2855 -- 96.0
X Ray Diffraction 2.0345 2.116 -- 164 4192 0.2084 0.2328 -- 96.0
X Ray Diffraction 2.116 2.2122 -- 150 4148 0.198 0.2437 -- 96.0
X Ray Diffraction 2.2122 2.3289 -- 134 4163 0.2037 0.2274 -- 96.0
X Ray Diffraction 2.3289 2.4747 -- 137 4143 0.1988 0.2645 -- 95.0
X Ray Diffraction 2.4747 2.6658 -- 148 4153 0.2046 0.2489 -- 95.0
X Ray Diffraction 2.6658 2.9339 -- 152 4146 0.2033 0.2468 -- 95.0
X Ray Diffraction 2.9339 3.3582 -- 146 4187 0.1928 0.2668 -- 96.0
X Ray Diffraction 3.3582 4.2299 -- 148 4238 0.1798 0.1909 -- 96.0
X Ray Diffraction 4.2299 36.1364 -- 134 4211 0.1994 0.2444 -- 94.0
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.008
f_chiral_restr 0.119
f_dihedral_angle_d 13.349
f_angle_d 1.557
f_bond_d 0.013
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 4888
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 599

Software

Computing
Computing Package Purpose
ADSC Data Collection
PHENIX (phenix.refine: 1.8_1069) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: 1.8_1069) refinement
ADSC data collection