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X-RAY DIFFRACTION
Materials and Methods page
4J5Q
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION
    pH 5.6
    Temperature 277.0
    Details 100mM sodium citrate, 20% isopropanol, 20% PEG 4000 , pH 5.6, VAPOR DIFFUSION, temperature 277K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 63.31 α = 90
    b = 75.37 β = 100.63
    c = 35 γ = 90
     
    Space Group
    Space Group Name:    C 1 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MARMOSAIC 300 mm CCD
    Collection Date 2010-11-11
     
    Diffraction Radiation
    Monochromator Si 111
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 22-BM
    Wavelength List 1.0000
    Site APS
    Beamline 22-BM
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 1.0
    Observed Criterion Sigma(I) 1.0
    Resolution(High) 1.35
    Resolution(Low) 50
    Number Reflections(All) 35292
    Number Reflections(Observed) 34621
    Percent Possible(Observed) 98.1
    R Merge I(Observed) 0.099
    Redundancy 3.5
     
    High Resolution Shell Details
    Resolution(High) 1.35
    Resolution(Low) 1.4
    Percent Possible(All) 96.2
    R Merge I(Observed) 0.445
    Redundancy 2.9
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.35
    Resolution(Low) 30.055
    Cut-off Sigma(F) 1.38
    Number of Reflections(all) 35292
    Number of Reflections(Observed) 34392
    Number of Reflections(R-Free) 1756
    Percent Reflections(Observed) 97.14
    R-Factor(Observed) 0.1323
    R-Work 0.1307
    R-Free 0.1614
     
    Temperature Factor Modeling
    Mean Isotropic B Value 22.6861
    Anisotropic B[1][1] 0.3295
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.441
    Anisotropic B[2][2] -1.58
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 1.2505
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.35
    Shell Resolution(Low) 1.3865
    Number of Reflections(R-Free) 121
    Number of Reflections(R-Work) 2330
    R-Factor(R-Work) 0.1777
    R-Factor(R-Free) 0.2015
    Percent Reflections(Observed) 91.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.3865
    Shell Resolution(Low) 1.4273
    Number of Reflections(R-Free) 132
    Number of Reflections(R-Work) 2426
    R-Factor(R-Work) 0.1616
    R-Factor(R-Free) 0.1947
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.4273
    Shell Resolution(Low) 1.4734
    Number of Reflections(R-Free) 156
    Number of Reflections(R-Work) 2482
    R-Factor(R-Work) 0.1401
    R-Factor(R-Free) 0.1856
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.4734
    Shell Resolution(Low) 1.5261
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 2511
    R-Factor(R-Work) 0.1336
    R-Factor(R-Free) 0.1658
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.5261
    Shell Resolution(Low) 1.5872
    Number of Reflections(R-Free) 123
    Number of Reflections(R-Work) 2551
    R-Factor(R-Work) 0.1112
    R-Factor(R-Free) 0.15
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.5872
    Shell Resolution(Low) 1.6594
    Number of Reflections(R-Free) 130
    Number of Reflections(R-Work) 2497
    R-Factor(R-Work) 0.1082
    R-Factor(R-Free) 0.1452
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6594
    Shell Resolution(Low) 1.7469
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 2545
    R-Factor(R-Work) 0.1064
    R-Factor(R-Free) 0.1397
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7469
    Shell Resolution(Low) 1.8563
    Number of Reflections(R-Free) 115
    Number of Reflections(R-Work) 2577
    R-Factor(R-Work) 0.1073
    R-Factor(R-Free) 0.1419
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8563
    Shell Resolution(Low) 1.9996
    Number of Reflections(R-Free) 152
    Number of Reflections(R-Work) 2522
    R-Factor(R-Work) 0.103
    R-Factor(R-Free) 0.1327
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9996
    Shell Resolution(Low) 2.2008
    Number of Reflections(R-Free) 149
    Number of Reflections(R-Work) 2576
    R-Factor(R-Work) 0.1025
    R-Factor(R-Free) 0.1278
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2008
    Shell Resolution(Low) 2.5191
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2589
    R-Factor(R-Work) 0.1181
    R-Factor(R-Free) 0.1466
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5191
    Shell Resolution(Low) 3.1732
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 2593
    R-Factor(R-Work) 0.1409
    R-Factor(R-Free) 0.1912
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1732
    Shell Resolution(Low) 30.0628
    Number of Reflections(R-Free) 112
    Number of Reflections(R-Work) 2437
    R-Factor(R-Work) 0.1564
    R-Factor(R-Free) 0.1744
    Percent Reflections(Observed) 92.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.01
    f_chiral_restr 0.109
    f_dihedral_angle_d 13.268
    f_angle_d 1.713
    f_bond_d 0.015
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1149
    Nucleic Acid Atoms 0
    Heterogen Atoms 0
    Solvent Atoms 235
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) DENZO
    Data Reduction (data scaling) SCALEPACK
    Structure Solution Phaser
    Structure Refinement PHENIX (phenix.refine: 1.8.1_1168)
     
    Software
    data extraction pdb_extract version: 3.11
    refinement phenix
    data reduction SCALEPACK
    data collection DENZO