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X-RAY DIFFRACTION
Materials and Methods page
4J39
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 6
    Temperature 291.0
    Details 1.3 mM ammonium sulfate, 0.1 M MES, pH 6, VAPOR DIFFUSION, HANGING DROP, temperature 291K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 90.61 α = 90
    b = 90.61 β = 90
    c = 148.52 γ = 120
     
    Space Group
    Space Group Name:    H 3 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315r
    Collection Date 2011-11-22
     
    Diffraction Radiation
    Monochromator Si(111)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ESRF BEAMLINE ID23-1
    Wavelength List 0.9724
    Site ESRF
    Beamline ID23-1
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 1.7
    Resolution(Low) 20
    Number Reflections(Observed) 25529
    Percent Possible(Observed) 99.1
    R Merge I(Observed) 0.075
    Redundancy 4.8
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.7
    Resolution(Low) 15.0
    Number of Reflections(Observed) 24226
    Number of Reflections(R-Free) 1255
    Percent Reflections(Observed) 98.59
    R-Factor(Observed) 0.18175
    R-Work 0.18048
    R-Free 0.20695
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 36.088
    Anisotropic B[1][1] 2.77
    Anisotropic B[1][2] 1.39
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 2.77
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -4.16
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7
    Shell Resolution(Low) 1.748
    Number of Reflections(R-Free) 101
    Number of Reflections(R-Work) 1604
    R-Factor(R-Work) 0.295
    R-Factor(R-Free) 0.27
    Percent Reflections(Observed) 90.98
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 4.543
    r_scbond_it 3.261
    r_mcangle_it 3.003
    r_mcbond_other 0.535
    r_mcbond_it 1.81
    r_gen_planes_other 0.001
    r_gen_planes_refined 0.012
    r_chiral_restr 0.218
    r_dihedral_angle_4_deg 13.373
    r_dihedral_angle_3_deg 14.347
    r_dihedral_angle_2_deg 33.427
    r_dihedral_angle_1_deg 5.963
    r_angle_other_deg 2.595
    r_angle_refined_deg 2.479
    r_bond_other_d 0.001
    r_bond_refined_d 0.028
    r_xyhbond_nbd_refined 0.188
    r_symmetry_vdw_refined 0.149
    r_symmetry_vdw_other 0.389
    r_symmetry_hbond_refined 0.189
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 990
    Nucleic Acid Atoms 405
    Heterogen Atoms 20
    Solvent Atoms 151
     
     
  •   Software and Computing Hide
    Computing
    Data Collection ADSC Quantum
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution CNS
    Structure Refinement REFMAC 5.5.0110
     
    Software
    data extraction pdb_extract version: 3.11
    refinement REFMAC5 version: 5.2.0019