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X-RAY DIFFRACTION
Materials and Methods page
4J19
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, SITTING DROP
    pH 4.5
    Temperature 293.0
    Details 24% PEG 3350, 100 mM sodium acetate, 100 mM potassium sulfate, pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 111.43 α = 90
    b = 116.49 β = 90
    c = 75.67 γ = 90
     
    Space Group
    Space Group Name:    C 2 2 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 110
     
    Diffraction Detector
    Detector PIXEL
    Type DECTRIS PILATUS 2M
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SLS BEAMLINE X10SA
    Wavelength List 1.000
    Site SLS
    Beamline X10SA
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 2.0
    Observed Criterion Sigma(I) 1.0
    Resolution(High) 2.9
    Resolution(Low) 46.15
    Number Reflections(Observed) 11682
    Percent Possible(Observed) 95.0
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.9
    Resolution(Low) 46.155
    Cut-off Sigma(F) 2.01
    Number of Reflections(Observed) 11682
    Number of Reflections(R-Free) 556
    Percent Reflections(Observed) 95.15
    R-Factor(Observed) 0.1741
    R-Work 0.1718
    R-Free 0.2213
     
    Temperature Factor Modeling
    Data Not Available
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9
    Shell Resolution(Low) 3.0528
    Number of Reflections(R-Free) 129
    Number of Reflections(R-Work) 2686
    R-Factor(R-Work) 0.3182
    R-Factor(R-Free) 0.3733
    Percent Reflections(Observed) 94.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0528
    Shell Resolution(Low) 3.244
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 2758
    R-Factor(R-Work) 0.2651
    R-Factor(R-Free) 0.3304
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.244
    Shell Resolution(Low) 3.4944
    Number of Reflections(R-Free) 149
    Number of Reflections(R-Work) 2739
    R-Factor(R-Work) 0.1897
    R-Factor(R-Free) 0.2407
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.4944
    Shell Resolution(Low) 3.8459
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 2759
    R-Factor(R-Work) 0.1716
    R-Factor(R-Free) 0.22
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.8459
    Shell Resolution(Low) 4.402
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 2712
    R-Factor(R-Work) 0.1536
    R-Factor(R-Free) 0.2318
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.402
    Shell Resolution(Low) 5.5446
    Number of Reflections(R-Free) 151
    Number of Reflections(R-Work) 2706
    R-Factor(R-Work) 0.1584
    R-Factor(R-Free) 0.1582
    Percent Reflections(Observed) 94.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.5446
    Shell Resolution(Low) 46.155
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 2718
    R-Factor(R-Work) 0.1534
    R-Factor(R-Free) 0.2255
    Percent Reflections(Observed) 95.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.003
    f_chiral_restr 0.043
    f_dihedral_angle_d 24.244
    f_angle_d 0.989
    f_bond_d 0.005
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1230
    Nucleic Acid Atoms 769
    Heterogen Atoms 1
    Solvent Atoms 66
     
     
  •   Software and Computing Hide
    Computing
    Data Collection other
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XDS
    Structure Solution PHENIX
    Structure Refinement PHENIX (phenix.refine: dev_1218)
     
    Software
    refinement PHENIX version: (phenix.refine: dev_1218)
    model building PHENIX
    data collection other