X-RAY DIFFRACTION Experimental Data & Validation


Lost? View more X-Ray Crystallographic info.

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
pH 7
Temperature 289.0
Details 0.2M SODIUM CHLORIDE, 0.1M TRIS:HCL, 30% (W/V) PEG3000, PH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 289K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 31.69 α = 90
b = 132.85 β = 98.41
c = 38.67 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315 MIRROR 2011-10-05
Diffraction Radiation
Monochromator Protocol
SI 111 CRYSTAL SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 19-ID 0.97929 APS 19-ID

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.44 31.3 98.2 0.068 -- -- 4.0 55739 55739 0.0 -3.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.44 1.46 85.0 0.282 -- 5.9 3.1 2344

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.44 31.3 -- 1.38 -- 55667 2818 97.4 -- 0.17 0.169 0.199 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.4378 1.4626 -- 111 1862 0.2056 0.2657 -- 71.0
X Ray Diffraction 1.4626 1.4892 -- 116 2604 0.1898 0.2026 -- 94.0
X Ray Diffraction 1.4892 1.5178 -- 152 2644 0.1847 0.2375 -- 99.0
X Ray Diffraction 1.5178 1.5488 -- 142 2699 0.1779 0.2013 -- 99.0
X Ray Diffraction 1.5488 1.5825 -- 133 2728 0.1657 0.2313 -- 100.0
X Ray Diffraction 1.5825 1.6193 -- 135 2679 0.1619 0.1962 -- 100.0
X Ray Diffraction 1.6193 1.6598 -- 121 2733 0.1656 0.211 -- 100.0
X Ray Diffraction 1.6598 1.7047 -- 156 2679 0.1717 0.2329 -- 100.0
X Ray Diffraction 1.7047 1.7548 -- 137 2740 0.1777 0.2543 -- 100.0
X Ray Diffraction 1.7548 1.8114 -- 144 2650 0.1778 0.1855 -- 100.0
X Ray Diffraction 1.8114 1.8762 -- 148 2753 0.1711 0.2116 -- 100.0
X Ray Diffraction 1.8762 1.9513 -- 146 2677 0.173 0.2 -- 100.0
X Ray Diffraction 1.9513 2.0401 -- 156 2721 0.1724 0.1985 -- 100.0
X Ray Diffraction 2.0401 2.1476 -- 131 2732 0.1569 0.171 -- 100.0
X Ray Diffraction 2.1476 2.2821 -- 142 2698 0.1548 0.1736 -- 100.0
X Ray Diffraction 2.2821 2.4583 -- 163 2703 0.1579 0.1957 -- 100.0
X Ray Diffraction 2.4583 2.7055 -- 142 2709 0.1683 0.1868 -- 100.0
X Ray Diffraction 2.7055 3.0967 -- 154 2692 0.1727 0.2079 -- 99.0
X Ray Diffraction 3.0967 3.9004 -- 148 2635 0.1575 0.184 -- 96.0
X Ray Diffraction 3.9004 31.3524 -- 141 2511 0.1834 0.2084 -- 92.0
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.005
f_chiral_restr 0.066
f_dihedral_angle_d 15.818
f_angle_d 0.982
f_bond_d 0.006
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2802
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 477

Software

Computing
Computing Package Purpose
SBC-Collect Data Collection
HKL-3000 Data Reduction (intensity integration)
HKL-3000 Data Reduction (data scaling)
MOLREP Structure Solution
PHENIX (PHENIX.REFINE: 1.8.1_1168) Structure Refinement
Software
Software Name Purpose
PHENIX version: (PHENIX.REFINE: 1.8.1_1168) refinement
MOLREP model building
SBC-Collect data collection