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X-RAY DIFFRACTION
Materials and Methods page
4J0G
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, SITTING DROP
    pH 5.5
    Temperature 281.0
    Details 0.1M tri-sodium citrate pH 5.5, 20% PEG 3000, VAPOR DIFFUSION, SITTING DROP, temperature 281K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 46.36 α = 70.49
    b = 62.69 β = 86.93
    c = 83.12 γ = 79.1
     
    Space Group
    Space Group Name:    P 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type AUSTRALIAN SYNCHROTRON BEAMLINE MX2
    Wavelength List 0.9184
    Site AUSTRALIAN SYNCHROTRON
    Beamline MX2
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 2.5
    Number Reflections(Observed) 25246
    Percent Possible(Observed) 97.3
    B(Isotropic) From Wilson Plot 20.76
     
    High Resolution Shell Details
    Resolution(High) 2.5
    Resolution(Low) 2.64
    Percent Possible(All) 97.6
    R Merge I(Observed) 0.233
    Mean I Over Sigma(Observed) 5.6
    Redundancy 5.9
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MIR
    reflnsShellList 2.5
    Resolution(Low) 19.768
    Cut-off Sigma(F) 1.97
    Number of Reflections(Observed) 29147
    Number of Reflections(R-Free) 1452
    Percent Reflections(Observed) 97.44
    R-Factor(Observed) 0.1914
    R-Work 0.1893
    R-Free 0.232
     
    Temperature Factor Modeling
    Mean Isotropic B Value 22.5707
    Anisotropic B[1][1] 10.6682
    Anisotropic B[1][2] -6.6771
    Anisotropic B[1][3] 15.5774
    Anisotropic B[2][2] -4.5816
    Anisotropic B[2][3] -5.2056
    Anisotropic B[3][3] 3.6649
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5
    Shell Resolution(Low) 2.5892
    Number of Reflections(R-Free) 171
    Number of Reflections(R-Work) 2765
    R-Factor(R-Work) 0.2353
    R-Factor(R-Free) 0.3193
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5892
    Shell Resolution(Low) 2.6926
    Number of Reflections(R-Free) 151
    Number of Reflections(R-Work) 2746
    R-Factor(R-Work) 0.2186
    R-Factor(R-Free) 0.2916
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6926
    Shell Resolution(Low) 2.8148
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 2811
    R-Factor(R-Work) 0.2193
    R-Factor(R-Free) 0.256
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8148
    Shell Resolution(Low) 2.9628
    Number of Reflections(R-Free) 131
    Number of Reflections(R-Work) 2811
    R-Factor(R-Work) 0.2029
    R-Factor(R-Free) 0.2574
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9628
    Shell Resolution(Low) 3.1477
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2780
    R-Factor(R-Work) 0.2028
    R-Factor(R-Free) 0.2504
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1477
    Shell Resolution(Low) 3.3896
    Number of Reflections(R-Free) 148
    Number of Reflections(R-Work) 2780
    R-Factor(R-Work) 0.1921
    R-Factor(R-Free) 0.2539
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.3896
    Shell Resolution(Low) 3.7287
    Number of Reflections(R-Free) 152
    Number of Reflections(R-Work) 2786
    R-Factor(R-Work) 0.1828
    R-Factor(R-Free) 0.2073
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.7287
    Shell Resolution(Low) 4.2635
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 2775
    R-Factor(R-Work) 0.1647
    R-Factor(R-Free) 0.2012
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.2635
    Shell Resolution(Low) 5.3538
    Number of Reflections(R-Free) 121
    Number of Reflections(R-Work) 2763
    R-Factor(R-Work) 0.1548
    R-Factor(R-Free) 0.1961
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.3538
    Shell Resolution(Low) 19.7682
    Number of Reflections(R-Free) 160
    Number of Reflections(R-Work) 2678
    R-Factor(R-Work) 0.194
    R-Factor(R-Free) 0.2028
    Percent Reflections(Observed) 95.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.005
    f_chiral_restr 0.115
    f_dihedral_angle_d 14.384
    f_angle_d 1.382
    f_bond_d 0.006
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 7007
    Nucleic Acid Atoms 0
    Heterogen Atoms 69
    Solvent Atoms 326
     
     
  •   Software and Computing Hide
    Computing
    Data Collection blueice
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) SCALA
    Structure Solution PHENIX
    Structure Refinement PHENIX (phenix.refine: 1.7.1_743)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.7.1_743)
    model building PHENIX
    data collection blueice