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X-RAY DIFFRACTION
Materials and Methods page
4J0D
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, SITTING DROP
    pH 5.5
    Temperature 281.0
    Details 0.1M tri-sodium citrate pH 5.5, 20% PEG 3000, VAPOR DIFFUSION, SITTING DROP, temperature 281K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 46.94 α = 70.58
    b = 62.92 β = 85.7
    c = 84.07 γ = 78.96
     
    Space Group
    Space Group Name:    P 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type AUSTRALIAN SYNCHROTRON BEAMLINE MX2
    Wavelength List 0.9184
    Site AUSTRALIAN SYNCHROTRON
    Beamline MX2
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 1.6
    Number Reflections(Observed) 109375
    Percent Possible(Observed) 93.1
    B(Isotropic) From Wilson Plot 14.12
     
    High Resolution Shell Details
    Resolution(High) 1.6
    Resolution(Low) 1.69
    Percent Possible(All) 72.9
    R Merge I(Observed) 0.059
    Mean I Over Sigma(Observed) 2.9
    Redundancy 3.4
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MIR
    reflnsShellList 1.6
    Resolution(Low) 20.018
    Cut-off Sigma(F) 1.98
    Number of Reflections(Observed) 109373
    Number of Reflections(R-Free) 1849
    Percent Reflections(Observed) 93.1
    R-Factor(Observed) 0.144
    R-Work 0.1435
    R-Free 0.1747
     
    Temperature Factor Modeling
    Mean Isotropic B Value 21.4172
    Anisotropic B[1][1] 3.7855
    Anisotropic B[1][2] 0.1005
    Anisotropic B[1][3] 0.5244
    Anisotropic B[2][2] -3.9841
    Anisotropic B[2][3] -1.3131
    Anisotropic B[3][3] 0.1985
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6
    Shell Resolution(Low) 1.6432
    Number of Reflections(R-Free) 96
    Number of Reflections(R-Work) 5707
    R-Factor(R-Work) 0.2359
    R-Factor(R-Free) 0.2578
    Percent Reflections(Observed) 64.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6432
    Shell Resolution(Low) 1.6915
    Number of Reflections(R-Free) 113
    Number of Reflections(R-Work) 7451
    R-Factor(R-Work) 0.188
    R-Factor(R-Free) 0.2326
    Percent Reflections(Observed) 83.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6915
    Shell Resolution(Low) 1.7461
    Number of Reflections(R-Free) 150
    Number of Reflections(R-Work) 8476
    R-Factor(R-Work) 0.1635
    R-Factor(R-Free) 0.2218
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7461
    Shell Resolution(Low) 1.8085
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 8476
    R-Factor(R-Work) 0.1552
    R-Factor(R-Free) 0.194
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8085
    Shell Resolution(Low) 1.8808
    Number of Reflections(R-Free) 154
    Number of Reflections(R-Work) 8519
    R-Factor(R-Work) 0.1407
    R-Factor(R-Free) 0.1982
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8808
    Shell Resolution(Low) 1.9664
    Number of Reflections(R-Free) 147
    Number of Reflections(R-Work) 8510
    R-Factor(R-Work) 0.1326
    R-Factor(R-Free) 0.1804
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9664
    Shell Resolution(Low) 2.0699
    Number of Reflections(R-Free) 149
    Number of Reflections(R-Work) 8525
    R-Factor(R-Work) 0.1329
    R-Factor(R-Free) 0.1901
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0699
    Shell Resolution(Low) 2.1995
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 8593
    R-Factor(R-Work) 0.1277
    R-Factor(R-Free) 0.1902
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1995
    Shell Resolution(Low) 2.369
    Number of Reflections(R-Free) 149
    Number of Reflections(R-Work) 8620
    R-Factor(R-Work) 0.1284
    R-Factor(R-Free) 0.1473
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.369
    Shell Resolution(Low) 2.607
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 8659
    R-Factor(R-Work) 0.1268
    R-Factor(R-Free) 0.1707
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.607
    Shell Resolution(Low) 2.9832
    Number of Reflections(R-Free) 152
    Number of Reflections(R-Work) 8619
    R-Factor(R-Work) 0.1374
    R-Factor(R-Free) 0.1585
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9832
    Shell Resolution(Low) 3.7544
    Number of Reflections(R-Free) 148
    Number of Reflections(R-Work) 8659
    R-Factor(R-Work) 0.1388
    R-Factor(R-Free) 0.1777
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.7544
    Shell Resolution(Low) 20.0191
    Number of Reflections(R-Free) 157
    Number of Reflections(R-Work) 8710
    R-Factor(R-Work) 0.1559
    R-Factor(R-Free) 0.1534
    Percent Reflections(Observed) 98.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.008
    f_chiral_restr 0.112
    f_dihedral_angle_d 13.771
    f_angle_d 1.596
    f_bond_d 0.019
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 7163
    Nucleic Acid Atoms 0
    Heterogen Atoms 117
    Solvent Atoms 787
     
     
  •   Software and Computing Hide
    Computing
    Data Collection blueice
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) SCALA
    Structure Solution SOLVE
    Structure Refinement PHENIX (phenix.refine: 1.7.1_743)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.7.1_743)
    model building SOLVE
    data collection blueice