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X-RAY DIFFRACTION
Materials and Methods page
4IZQ
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, SITTING DROP
    pH 7
    Temperature 298.0
    Details 0.1mM 2-phenylpyridine-Pd12-cyanurate, 80mM KCl, 40mM Na-cacodylate, 20mM BaCl2, 12mM spermine, 10%(v/v) 2-methyl-2,4-pentanediol, 1ml 2-methyl-2,4-pentanediol, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 24.82 α = 90
    b = 43.9 β = 90
    c = 46.57 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector PIXEL
    Type DECTRIS PILATUS 6M
    Collection Date 2012-10-13
     
    Diffraction Radiation
    Monochromator Si(111) dual crystal
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type DIAMOND BEAMLINE I02
    Wavelength List 1.7712
    Site DIAMOND
    Beamline I02
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 2.0
    Resolution(High) 2.04
    Resolution(Low) 31.94
    Number Reflections(All) 3153
    Number Reflections(Observed) 3153
    Percent Possible(Observed) 90.7
     
    High Resolution Shell Details
    Resolution(High) 2.04
    Resolution(Low) 2.09
    Percent Possible(All) 57.3
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.04
    Resolution(Low) 31.94
    Number of Reflections(all) 3301
    Number of Reflections(Observed) 3001
    Number of Reflections(R-Free) 137
    Percent Reflections(Observed) 89.33
    R-Factor(Observed) 0.1997
    R-Work 0.19703
    R-Free 0.25227
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 25.844
    Anisotropic B[1][1] -2.7
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 1.04
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 1.66
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.042
    Shell Resolution(Low) 2.094
    Number of Reflections(R-Free) 9
    Number of Reflections(R-Work) 132
    R-Factor(R-Work) 0.311
    R-Factor(R-Free) 0.459
    Percent Reflections(Observed) 55.08
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_gen_planes_other 0.002
    r_gen_planes_refined 0.014
    r_chiral_restr 0.086
    r_angle_other_deg 1.469
    r_angle_refined_deg 1.549
    r_bond_other_d 0.003
    r_bond_refined_d 0.01
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 0
    Nucleic Acid Atoms 404
    Heterogen Atoms 0
    Solvent Atoms 22
     
     
  •   Software and Computing Hide
    Computing
    Data Collection GDA
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) Aimless
    Structure Solution PHASER
    Structure Refinement REFMAC 5.7.0029
     
    Software
    refinement REFMAC version: 5.7.0029
    model building PHASER
    data collection GDA