POP-OUT | CLOSE

An Information Portal to 105097 Biological Macromolecular Structures

X-RAY DIFFRACTION
Materials and Methods page
4IY9
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 5.5
    Temperature 293.0
    Details 2.0 M (NH4)2SO4, 0.1 M NH4I, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 154.15 α = 90
    b = 34.56 β = 97.99
    c = 93.14 γ = 90
     
    Space Group
    Space Group Name:    C 1 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MARMOSAIC 225 mm CCD
    Details mirrors
    Collection Date 2012-05-18
     
    Diffraction Radiation
    Monochromator KMC-1
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type BESSY BEAMLINE 14.1
    Wavelength 0.918
    Site BESSY
    Beamline 14.1
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 2.1
    Resolution(Low) 38.16
    Number Reflections(All) 29081
    Number Reflections(Observed) 26553
    Percent Possible(Observed) 91.3
    R Merge I(Observed) 0.06
    B(Isotropic) From Wilson Plot 41.8
    Redundancy 3.7
     
    High Resolution Shell Details
    Resolution(High) 2.1
    Resolution(Low) 2.1841
    Percent Possible(All) 86.3
    R Merge I(Observed) 0.496
    Mean I Over Sigma(Observed) 2.58
    Redundancy 2.7
    Number Unique Reflections(All) 3770
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.1
    Resolution(Low) 38.1
    Cut-off Sigma(F) 1.35
    Number of Reflections(all) 29081
    Number of Reflections(Observed) 26475
    Number of Reflections(R-Free) 1325
    Percent Reflections(Observed) 91.08
    R-Factor(Observed) 0.2188
    R-Work 0.2161
    R-Free 0.2715
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Isotropic Thermal Model isotropic
    Mean Isotropic B Value 34.8
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1
    Shell Resolution(Low) 2.1841
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 2617
    R-Factor(R-Work) 0.3239
    R-Factor(R-Free) 0.3961
    Percent Reflections(Observed) 86.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1841
    Shell Resolution(Low) 2.2835
    Number of Reflections(R-Free) 69
    Number of Reflections(R-Work) 1330
    R-Factor(R-Work) 0.4253
    R-Factor(R-Free) 0.4663
    Percent Reflections(Observed) 44.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2835
    Shell Resolution(Low) 2.4039
    Number of Reflections(R-Free) 153
    Number of Reflections(R-Work) 2892
    R-Factor(R-Work) 0.2797
    R-Factor(R-Free) 0.3934
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4039
    Shell Resolution(Low) 2.5544
    Number of Reflections(R-Free) 159
    Number of Reflections(R-Work) 3017
    R-Factor(R-Work) 0.2774
    R-Factor(R-Free) 0.3749
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5544
    Shell Resolution(Low) 2.7516
    Number of Reflections(R-Free) 159
    Number of Reflections(R-Work) 3025
    R-Factor(R-Work) 0.2662
    R-Factor(R-Free) 0.3637
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7516
    Shell Resolution(Low) 3.0284
    Number of Reflections(R-Free) 159
    Number of Reflections(R-Work) 3021
    R-Factor(R-Work) 0.2386
    R-Factor(R-Free) 0.2881
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0284
    Shell Resolution(Low) 3.4664
    Number of Reflections(R-Free) 160
    Number of Reflections(R-Work) 3040
    R-Factor(R-Work) 0.2158
    R-Factor(R-Free) 0.2708
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.4664
    Shell Resolution(Low) 4.3663
    Number of Reflections(R-Free) 160
    Number of Reflections(R-Work) 3050
    R-Factor(R-Work) 0.1715
    R-Factor(R-Free) 0.2038
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.3663
    Shell Resolution(Low) 38.1701
    Number of Reflections(R-Free) 167
    Number of Reflections(R-Work) 3158
    R-Factor(R-Work) 0.1776
    R-Factor(R-Free) 0.2227
    Percent Reflections(Observed) 99.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.01
    f_chiral_restr 0.105
    f_dihedral_angle_d 16.449
    f_angle_d 1.81
    f_bond_d 0.019
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 3842
    Nucleic Acid Atoms 0
    Heterogen Atoms 1
    Solvent Atoms 124
     
     
  •   Software and Computing Hide
    Computing
    Data Collection XDS
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XDS
    Structure Solution MolRep
    Structure Refinement PHENIX (phenix.refine: 1.8.1_1168)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.8.1_1168)
    model building MolRep
    data collection XDS