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X-RAY DIFFRACTION
Materials and Methods page
4IVE
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, SITTING DROP
    pH 5.62
    Temperature 277.0
    Details 26.00% polyethylene glycol 6000, 0.1M MES pH 5.62, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 67.39 α = 90
    b = 67.39 β = 90
    c = 101.38 γ = 90
     
    Space Group
    Space Group Name:    P 43
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315
    Details KOHZU: Double Crystal Si(111)
    Collection Date 2012-10-17
     
    Diffraction Radiation
    Monochromator Double Crystal Si(111)
    Diffraction Protocol MAD
     
    Diffraction Source
    Source SYNCHROTRON
    Type ALS BEAMLINE 8.2.2
    Wavelength List 0.979493,0.918401,0.979284
    Site ALS
    Beamline 8.2.2
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 2.3
    Resolution(Low) 43.13
    Number Reflections(Observed) 20106
    Percent Possible(Observed) 99.5
    R Merge I(Observed) 0.097
    B(Isotropic) From Wilson Plot 47.537
     
    High Resolution Shell Details
    Resolution(High) 2.3
    Resolution(Low) 2.38
    Percent Possible(All) 97.8
    R Merge I(Observed) 0.756
    Mean I Over Sigma(Observed) 2.4
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MAD
    reflnsShellList 2.3
    Resolution(Low) 43.128
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 20056
    Number of Reflections(R-Free) 1016
    Percent Reflections(Observed) 99.58
    R-Factor(Observed) 0.2011
    R-Work 0.2005
    R-Free 0.2121
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 56.6623
    Anisotropic B[1][1] -5.0464
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -5.0464
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 10.0927
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3
    Shell Resolution(Low) 2.42
    Number of Reflections(R-Free) 132
    Number of Reflections(R-Work) 2747
    R-Factor(R-Work) 0.1995
    R-Factor(R-Free) 0.2442
    Percent Reflections(Observed) 99.58
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    t_other_torsion 2.67
    t_omega_torsion 2.18
    t_angle_deg 1.05
    t_bond_d 0.01
     
    Coordinate Error
    Luzzati ESD(Observed) 0.357
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2310
    Nucleic Acid Atoms 0
    Heterogen Atoms 2
    Solvent Atoms 133
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XSCALE
    Structure Solution SHELXD,SHARP
    Structure Refinement BUSTER 2.10.0
     
    Software
    refinement BUSTER-TNT version: 2.10.0
    data processing Xscale version: March 15, 2012
    phasing SHARP
    phasing SHELX
    data extraction pdb_extract version: 3.10
    validation MOLPROBITY version: 3beta29