X-RAY DIFFRACTION Experimental Data & Validation


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Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 8.5
Temperature 293.0
Details 0.1 M Tris pH 8.5, ammonium sulfate 1.8 M, VAPOR DIFFUSION, HANGING DROP, temperature 293K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 78.71 α = 90
b = 78.71 β = 90
c = 203.24 γ = 90
Symmetry
Space Group P 43 21 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD MARMOSAIC 225 mm CCD -- 2011-04-13
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ESRF BEAMLINE BM14 0.97841 ESRF BM14

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2 20.03 100.0 0.137 0.137 -- 11.0 -- 44177 0.0 -3.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
SAD 2.001 20.03 -- 0.0 76982 44058 2085 93.56 0.1552 0.1552 0.153 0.1956 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.0014 2.0258 -- 126 2434 0.2305 0.2615 -- 85.0
X Ray Diffraction 2.0258 2.0515 -- 158 2292 0.2239 0.2805 -- 85.0
X Ray Diffraction 2.0515 2.0785 -- 143 2431 0.2121 0.232 -- 87.0
X Ray Diffraction 2.0785 2.1069 -- 140 2414 0.2041 0.2464 -- 88.0
X Ray Diffraction 2.1069 2.137 -- 108 2552 0.2005 0.2217 -- 89.0
X Ray Diffraction 2.137 2.1689 -- 143 2395 0.1905 0.2438 -- 87.0
X Ray Diffraction 2.1689 2.2028 -- 118 2513 0.1801 0.2554 -- 89.0
X Ray Diffraction 2.2028 2.2389 -- 135 2521 0.1771 0.2446 -- 91.0
X Ray Diffraction 2.2389 2.2775 -- 153 2567 0.1722 0.1857 -- 94.0
X Ray Diffraction 2.2775 2.3189 -- 154 2571 0.1675 0.1983 -- 89.0
X Ray Diffraction 2.3189 2.3635 -- 123 2501 0.1676 0.2186 -- 91.0
X Ray Diffraction 2.3635 2.4117 -- 100 2598 0.173 0.2401 -- 92.0
X Ray Diffraction 2.4117 2.4641 -- 141 2553 0.1634 0.2092 -- 92.0
X Ray Diffraction 2.4641 2.5214 -- 133 2580 0.1603 0.1897 -- 93.0
X Ray Diffraction 2.5214 2.5844 -- 162 2588 0.1656 0.2132 -- 93.0
X Ray Diffraction 2.5844 2.6542 -- 114 2674 0.1633 0.2436 -- 95.0
X Ray Diffraction 2.6542 2.7323 -- 144 2687 0.1617 0.21 -- 96.0
X Ray Diffraction 2.7323 2.8204 -- 155 2638 0.1649 0.2151 -- 96.0
X Ray Diffraction 2.8204 2.9211 -- 146 2766 0.1578 0.2159 -- 97.0
X Ray Diffraction 2.9211 3.0379 -- 154 2693 0.1628 0.2153 -- 97.0
X Ray Diffraction 3.0379 3.176 -- 148 2728 0.1489 0.1791 -- 98.0
X Ray Diffraction 3.176 3.3432 -- 150 2727 0.1488 0.1857 -- 99.0
X Ray Diffraction 3.3432 3.5524 -- 152 2743 0.1391 0.181 -- 99.0
X Ray Diffraction 3.5524 3.8261 -- 143 2802 0.12 0.1595 -- 99.0
X Ray Diffraction 3.8261 4.2101 -- 146 2749 0.1144 0.16 -- 99.0
X Ray Diffraction 4.2101 4.8168 -- 130 2770 0.1095 0.1292 -- 99.0
X Ray Diffraction 4.8168 6.0595 -- 131 2821 0.1275 0.1747 -- 100.0
X Ray Diffraction 6.0595 28.9388 -- 131 2793 0.155 0.1829 -- 100.0
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.004
f_chiral_restr 0.065
f_dihedral_angle_d 11.896
f_angle_d 0.945
f_bond_d 0.009
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 3409
Nucleic Acid Atoms 0
Heterogen Atoms 31
Solvent Atoms 618

Software

Computing
Computing Package Purpose
HKL-2000 Data Collection
HKL-2000 Data Reduction (intensity integration)
SCALEPACK Data Reduction (data scaling)
SHELXS Structure Solution
PHENIX (phenix.refine: dev_1269) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: dev_1269) refinement
SHELXS model building
HKL-2000 data collection