X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 43 α = 90
b = 115.43 β = 90
c = 180.1 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
-- -- 0.97948 -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.4 50 99.9 0.105 -- -- 14.5 -- 177093 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.4 1.45 100.0 0.458 -- -- 14.5 17477

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
Soaking 1.4 41.947 -- 1.34 -- 176908 1999 99.87 -- 0.1744 0.1742 0.1899 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.4003 1.4353 -- 141 12387 0.2025 0.2396 -- 100.0
X Ray Diffraction 1.4353 1.4741 -- 141 12297 0.1816 0.2143 -- 100.0
X Ray Diffraction 1.4741 1.5175 -- 142 12407 0.1669 0.1738 -- 100.0
X Ray Diffraction 1.5175 1.5665 -- 141 12349 0.1633 0.1793 -- 100.0
X Ray Diffraction 1.5665 1.6225 -- 142 12408 0.1618 0.1903 -- 100.0
X Ray Diffraction 1.6225 1.6875 -- 142 12398 0.1574 0.1951 -- 100.0
X Ray Diffraction 1.6875 1.7643 -- 142 12419 0.165 0.1769 -- 100.0
X Ray Diffraction 1.7643 1.8573 -- 142 12449 0.1631 0.214 -- 100.0
X Ray Diffraction 1.8573 1.9736 -- 143 12486 0.1685 0.1941 -- 100.0
X Ray Diffraction 1.9736 2.126 -- 142 12469 0.1668 0.1955 -- 100.0
X Ray Diffraction 2.126 2.34 -- 143 12523 0.1655 0.1719 -- 100.0
X Ray Diffraction 2.34 2.6785 -- 144 12633 0.1791 0.1823 -- 100.0
X Ray Diffraction 2.6785 3.3744 -- 145 12665 0.1886 0.21 -- 100.0
X Ray Diffraction 3.3744 41.9663 -- 149 13019 0.1802 0.1768 -- 99.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 12.9633
Anisotropic B[1][1] 1.3489
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -1.3237
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -0.0252
RMS Deviations
Key Refinement Restraint Deviation
f_angle_d 1.123
f_dihedral_angle_d 14.002
f_chiral_restr 0.07
f_bond_d 0.006
f_plane_restr 0.005
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 6892
Nucleic Acid Atoms 0
Heterogen Atoms 206
Solvent Atoms 681

Software

Software
Software Name Purpose
DENZO data reduction
SCALEPACK data scaling
PHENIX refinement version: 1.7.3_928
PDB_EXTRACT data extraction version: 3.11