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X-RAY DIFFRACTION
Materials and Methods page
4ITB
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 43 α = 90
    b = 115.43 β = 90
    c = 180.1 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Wavelength List 0.97948
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 1.4
    Resolution(Low) 50
    Number Reflections(Observed) 177093
    Percent Possible(Observed) 99.9
    R Merge I(Observed) 0.105
    Redundancy 14.5
     
    High Resolution Shell Details
    Resolution(High) 1.4
    Resolution(Low) 1.45
    Percent Possible(All) 100.0
    R Merge I(Observed) 0.458
    Redundancy 14.5
    Number Unique Reflections(All) 17477
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method Soaking
    reflnsShellList 1.4
    Resolution(Low) 41.947
    Cut-off Sigma(F) 1.34
    Number of Reflections(Observed) 176908
    Number of Reflections(R-Free) 1999
    Percent Reflections(Observed) 99.87
    R-Factor(Observed) 0.1744
    R-Work 0.1742
    R-Free 0.1899
     
    Temperature Factor Modeling
    Mean Isotropic B Value 12.9633
    Anisotropic B[1][1] 1.3489
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -1.3237
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.0252
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.4003
    Shell Resolution(Low) 1.4353
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 12387
    R-Factor(R-Work) 0.2025
    R-Factor(R-Free) 0.2396
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.4353
    Shell Resolution(Low) 1.4741
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 12297
    R-Factor(R-Work) 0.1816
    R-Factor(R-Free) 0.2143
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.4741
    Shell Resolution(Low) 1.5175
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 12407
    R-Factor(R-Work) 0.1669
    R-Factor(R-Free) 0.1738
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.5175
    Shell Resolution(Low) 1.5665
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 12349
    R-Factor(R-Work) 0.1633
    R-Factor(R-Free) 0.1793
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.5665
    Shell Resolution(Low) 1.6225
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 12408
    R-Factor(R-Work) 0.1618
    R-Factor(R-Free) 0.1903
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6225
    Shell Resolution(Low) 1.6875
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 12398
    R-Factor(R-Work) 0.1574
    R-Factor(R-Free) 0.1951
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6875
    Shell Resolution(Low) 1.7643
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 12419
    R-Factor(R-Work) 0.165
    R-Factor(R-Free) 0.1769
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7643
    Shell Resolution(Low) 1.8573
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 12449
    R-Factor(R-Work) 0.1631
    R-Factor(R-Free) 0.214
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8573
    Shell Resolution(Low) 1.9736
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 12486
    R-Factor(R-Work) 0.1685
    R-Factor(R-Free) 0.1941
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9736
    Shell Resolution(Low) 2.126
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 12469
    R-Factor(R-Work) 0.1668
    R-Factor(R-Free) 0.1955
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.126
    Shell Resolution(Low) 2.34
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 12523
    R-Factor(R-Work) 0.1655
    R-Factor(R-Free) 0.1719
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.34
    Shell Resolution(Low) 2.6785
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 12633
    R-Factor(R-Work) 0.1791
    R-Factor(R-Free) 0.1823
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6785
    Shell Resolution(Low) 3.3744
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 12665
    R-Factor(R-Work) 0.1886
    R-Factor(R-Free) 0.21
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.3744
    Shell Resolution(Low) 41.9663
    Number of Reflections(R-Free) 149
    Number of Reflections(R-Work) 13019
    R-Factor(R-Work) 0.1802
    R-Factor(R-Free) 0.1768
    Percent Reflections(Observed) 99.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_dihedral_angle_d 14.002
    f_plane_restr 0.005
    f_chiral_restr 0.07
    f_angle_d 1.123
    f_bond_d 0.006
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 6892
    Nucleic Acid Atoms 0
    Heterogen Atoms 206
    Solvent Atoms 681
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) DENZO
    Data Reduction (data scaling) SCALEPACK
    Structure Refinement PHENIX (phenix.refine: 1.7.3_928)
     
    Software
    data extraction pdb_extract version: 3.11
    refinement phenix
    data reduction SCALEPACK
    data collection DENZO