X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 42.91 α = 90
b = 115.52 β = 90
c = 180.1 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON OTHER 0.97948 -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.4 50 99.7 0.11 -- -- 13.9 -- 176565 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.4 1.45 99.6 0.492 -- -- 14.1 17419

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
Soaking data 1.4 41.743 -- 1.34 -- 176393 1999 99.62 -- 0.1747 0.1745 0.1869 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.3999 1.4349 -- 141 12289 0.1917 0.2152 -- 99.0
X Ray Diffraction 1.4349 1.4737 -- 140 12266 0.1826 0.2202 -- 100.0
X Ray Diffraction 1.4737 1.5171 -- 142 12372 0.1699 0.2018 -- 100.0
X Ray Diffraction 1.5171 1.566 -- 142 12337 0.1657 0.1894 -- 100.0
X Ray Diffraction 1.566 1.622 -- 142 12385 0.1637 0.1764 -- 100.0
X Ray Diffraction 1.622 1.6869 -- 142 12394 0.1618 0.1629 -- 100.0
X Ray Diffraction 1.6869 1.7637 -- 142 12436 0.166 0.1749 -- 100.0
X Ray Diffraction 1.7637 1.8567 -- 144 12459 0.165 0.1849 -- 100.0
X Ray Diffraction 1.8567 1.973 -- 142 12452 0.1673 0.209 -- 100.0
X Ray Diffraction 1.973 2.1254 -- 144 12474 0.1667 0.1857 -- 100.0
X Ray Diffraction 2.1254 2.3392 -- 143 12515 0.167 0.1905 -- 100.0
X Ray Diffraction 2.3392 2.6777 -- 145 12625 0.1773 0.1757 -- 100.0
X Ray Diffraction 2.6777 3.3734 -- 145 12607 0.1843 0.1924 -- 100.0
X Ray Diffraction 3.3734 41.7611 -- 145 12783 0.1843 0.1814 -- 97.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 11.5987
Anisotropic B[1][1] -0.7861
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -0.2792
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 1.0652
RMS Deviations
Key Refinement Restraint Deviation
f_dihedral_angle_d 14.576
f_plane_restr 0.005
f_chiral_restr 0.073
f_angle_d 1.132
f_bond_d 0.006
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 6882
Nucleic Acid Atoms 0
Heterogen Atoms 232
Solvent Atoms 690

Software

Computing
Computing Package Purpose
DENZO Data Reduction (intensity integration)
SCALEPACK Data Reduction (data scaling)
PHENIX (phenix.refine: 1.7.3_928) Structure Refinement
Software
Software Name Purpose
pdb_extract version: 3.11 data extraction
phenix refinement
SCALEPACK data reduction
DENZO data collection