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X-RAY DIFFRACTION
Materials and Methods page
4ITA
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 42.91 α = 90
    b = 115.52 β = 90
    c = 180.1 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type OTHER
    Wavelength List 0.97948
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 1.4
    Resolution(Low) 50
    Number Reflections(Observed) 176565
    Percent Possible(Observed) 99.7
    R Merge I(Observed) 0.11
    Redundancy 13.9
     
    High Resolution Shell Details
    Resolution(High) 1.4
    Resolution(Low) 1.45
    Percent Possible(All) 99.6
    R Merge I(Observed) 0.492
    Redundancy 14.1
    Number Unique Reflections(All) 17419
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method Soaking data
    reflnsShellList 1.4
    Resolution(Low) 41.743
    Cut-off Sigma(F) 1.34
    Number of Reflections(Observed) 176393
    Number of Reflections(R-Free) 1999
    Percent Reflections(Observed) 99.62
    R-Factor(Observed) 0.1747
    R-Work 0.1745
    R-Free 0.1869
     
    Temperature Factor Modeling
    Mean Isotropic B Value 11.5987
    Anisotropic B[1][1] -0.7861
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -0.2792
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 1.0652
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.3999
    Shell Resolution(Low) 1.4349
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 12289
    R-Factor(R-Work) 0.1917
    R-Factor(R-Free) 0.2152
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.4349
    Shell Resolution(Low) 1.4737
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 12266
    R-Factor(R-Work) 0.1826
    R-Factor(R-Free) 0.2202
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.4737
    Shell Resolution(Low) 1.5171
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 12372
    R-Factor(R-Work) 0.1699
    R-Factor(R-Free) 0.2018
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.5171
    Shell Resolution(Low) 1.566
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 12337
    R-Factor(R-Work) 0.1657
    R-Factor(R-Free) 0.1894
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.566
    Shell Resolution(Low) 1.622
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 12385
    R-Factor(R-Work) 0.1637
    R-Factor(R-Free) 0.1764
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.622
    Shell Resolution(Low) 1.6869
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 12394
    R-Factor(R-Work) 0.1618
    R-Factor(R-Free) 0.1629
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6869
    Shell Resolution(Low) 1.7637
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 12436
    R-Factor(R-Work) 0.166
    R-Factor(R-Free) 0.1749
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7637
    Shell Resolution(Low) 1.8567
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 12459
    R-Factor(R-Work) 0.165
    R-Factor(R-Free) 0.1849
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8567
    Shell Resolution(Low) 1.973
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 12452
    R-Factor(R-Work) 0.1673
    R-Factor(R-Free) 0.209
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.973
    Shell Resolution(Low) 2.1254
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 12474
    R-Factor(R-Work) 0.1667
    R-Factor(R-Free) 0.1857
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1254
    Shell Resolution(Low) 2.3392
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 12515
    R-Factor(R-Work) 0.167
    R-Factor(R-Free) 0.1905
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3392
    Shell Resolution(Low) 2.6777
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 12625
    R-Factor(R-Work) 0.1773
    R-Factor(R-Free) 0.1757
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6777
    Shell Resolution(Low) 3.3734
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 12607
    R-Factor(R-Work) 0.1843
    R-Factor(R-Free) 0.1924
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.3734
    Shell Resolution(Low) 41.7611
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 12783
    R-Factor(R-Work) 0.1843
    R-Factor(R-Free) 0.1814
    Percent Reflections(Observed) 97.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_dihedral_angle_d 14.576
    f_plane_restr 0.005
    f_chiral_restr 0.073
    f_angle_d 1.132
    f_bond_d 0.006
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 6882
    Nucleic Acid Atoms 0
    Heterogen Atoms 232
    Solvent Atoms 690
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) DENZO
    Data Reduction (data scaling) SCALEPACK
    Structure Refinement PHENIX (phenix.refine: 1.7.3_928)
     
    Software
    data extraction pdb_extract version: 3.11
    refinement phenix
    data reduction SCALEPACK
    data collection DENZO