X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 42.78 α = 90
b = 115.34 β = 90
c = 179.27 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON OTHER 0.97935 -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.7 50 99.5 0.174 -- -- 14.3 -- 98424 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.7 1.76 99.4 0.589 -- -- 14.7 9677

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.7 39.141 -- 1.34 -- 98292 1997 99.44 -- 0.1838 0.1833 0.2059 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.6993 1.7418 -- 139 6717 0.2251 0.2818 -- 99.0
X Ray Diffraction 1.7418 1.7889 -- 141 6840 0.2098 0.2479 -- 100.0
X Ray Diffraction 1.7889 1.8415 -- 141 6782 0.199 0.2687 -- 99.0
X Ray Diffraction 1.8415 1.901 -- 141 6779 0.1798 0.2044 -- 100.0
X Ray Diffraction 1.901 1.9689 -- 141 6841 0.1709 0.2071 -- 100.0
X Ray Diffraction 1.9689 2.0477 -- 143 6857 0.1661 0.21 -- 100.0
X Ray Diffraction 2.0477 2.1409 -- 142 6857 0.1679 0.1948 -- 100.0
X Ray Diffraction 2.1409 2.2538 -- 143 6870 0.1663 0.2105 -- 100.0
X Ray Diffraction 2.2538 2.395 -- 143 6884 0.1691 0.2167 -- 100.0
X Ray Diffraction 2.395 2.5799 -- 142 6874 0.1762 0.2178 -- 100.0
X Ray Diffraction 2.5799 2.8394 -- 145 6951 0.1823 0.2126 -- 100.0
X Ray Diffraction 2.8394 3.2501 -- 144 6952 0.1853 0.1834 -- 100.0
X Ray Diffraction 3.2501 4.0941 -- 143 6964 0.1818 0.1974 -- 99.0
X Ray Diffraction 4.0941 39.1517 -- 149 7127 0.2014 0.1865 -- 97.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 14.6407
Anisotropic B[1][1] 4.712
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -4.0032
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -0.7088
RMS Deviations
Key Refinement Restraint Deviation
f_dihedral_angle_d 13.899
f_plane_restr 0.005
f_chiral_restr 0.073
f_angle_d 1.1
f_bond_d 0.006
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 6882
Nucleic Acid Atoms 0
Heterogen Atoms 134
Solvent Atoms 610

Software

Computing
Computing Package Purpose
SCALEPACK Data Reduction (data scaling)
PHENIX (phenix.refine: 1.7.3_928) Structure Refinement
Software
Software Name Purpose
pdb_extract version: 3.11 data extraction
phenix refinement
SCALEPACK data reduction