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X-RAY DIFFRACTION
Materials and Methods page
4IT9
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 42.78 α = 90
    b = 115.34 β = 90
    c = 179.27 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type OTHER
    Wavelength List 0.97935
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 1.7
    Resolution(Low) 50
    Number Reflections(Observed) 98424
    Percent Possible(Observed) 99.5
    R Merge I(Observed) 0.174
    Redundancy 14.3
     
    High Resolution Shell Details
    Resolution(High) 1.7
    Resolution(Low) 1.76
    Percent Possible(All) 99.4
    R Merge I(Observed) 0.589
    Redundancy 14.7
    Number Unique Reflections(All) 9677
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.7
    Resolution(Low) 39.141
    Cut-off Sigma(F) 1.34
    Number of Reflections(Observed) 98292
    Number of Reflections(R-Free) 1997
    Percent Reflections(Observed) 99.44
    R-Factor(Observed) 0.1838
    R-Work 0.1833
    R-Free 0.2059
     
    Temperature Factor Modeling
    Mean Isotropic B Value 14.6407
    Anisotropic B[1][1] 4.712
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -4.0032
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.7088
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6993
    Shell Resolution(Low) 1.7418
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 6717
    R-Factor(R-Work) 0.2251
    R-Factor(R-Free) 0.2818
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7418
    Shell Resolution(Low) 1.7889
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 6840
    R-Factor(R-Work) 0.2098
    R-Factor(R-Free) 0.2479
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7889
    Shell Resolution(Low) 1.8415
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 6782
    R-Factor(R-Work) 0.199
    R-Factor(R-Free) 0.2687
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8415
    Shell Resolution(Low) 1.901
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 6779
    R-Factor(R-Work) 0.1798
    R-Factor(R-Free) 0.2044
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.901
    Shell Resolution(Low) 1.9689
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 6841
    R-Factor(R-Work) 0.1709
    R-Factor(R-Free) 0.2071
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9689
    Shell Resolution(Low) 2.0477
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 6857
    R-Factor(R-Work) 0.1661
    R-Factor(R-Free) 0.21
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0477
    Shell Resolution(Low) 2.1409
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 6857
    R-Factor(R-Work) 0.1679
    R-Factor(R-Free) 0.1948
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1409
    Shell Resolution(Low) 2.2538
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 6870
    R-Factor(R-Work) 0.1663
    R-Factor(R-Free) 0.2105
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2538
    Shell Resolution(Low) 2.395
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 6884
    R-Factor(R-Work) 0.1691
    R-Factor(R-Free) 0.2167
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.395
    Shell Resolution(Low) 2.5799
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 6874
    R-Factor(R-Work) 0.1762
    R-Factor(R-Free) 0.2178
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5799
    Shell Resolution(Low) 2.8394
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 6951
    R-Factor(R-Work) 0.1823
    R-Factor(R-Free) 0.2126
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8394
    Shell Resolution(Low) 3.2501
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 6952
    R-Factor(R-Work) 0.1853
    R-Factor(R-Free) 0.1834
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2501
    Shell Resolution(Low) 4.0941
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 6964
    R-Factor(R-Work) 0.1818
    R-Factor(R-Free) 0.1974
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.0941
    Shell Resolution(Low) 39.1517
    Number of Reflections(R-Free) 149
    Number of Reflections(R-Work) 7127
    R-Factor(R-Work) 0.2014
    R-Factor(R-Free) 0.1865
    Percent Reflections(Observed) 97.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_dihedral_angle_d 13.899
    f_plane_restr 0.005
    f_chiral_restr 0.073
    f_angle_d 1.1
    f_bond_d 0.006
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 6882
    Nucleic Acid Atoms 0
    Heterogen Atoms 134
    Solvent Atoms 610
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (data scaling) SCALEPACK
    Structure Refinement PHENIX (phenix.refine: 1.7.3_928)
     
    Software
    data extraction pdb_extract version: 3.11
    refinement phenix
    data reduction SCALEPACK