X-RAY DIFFRACTION Experimental Data & Validation


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Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
pH 7.5
Temperature 289.0
Details 0.2 M Ammonium sulfate, 0.1 M HEPES pH 7.5, 25 % w/v Polyehtlyene glycol 3350, VAPOR DIFFUSION, SITTING DROP, temperature 289K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 62.86 α = 90
b = 191.5 β = 89.95
c = 89.95 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 210r mirrors 2010-02-25
Diffraction Radiation
Monochromator Protocol
double crystal monochromator SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 19-BM 0.97918 APS 19-BM

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.38 50 98.8 -- 0.109 -- 5.3 -- 4160 0.0 0.0 44.35
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.4 2.44 98.4 -- 0.72 3.0 5.2 4160

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
SAD 2.378 36.589 -- 0.0 -- -- 4171 97.47 0.183 0.183 0.181 0.21 random
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.378 2.4191 3309 154 3155 0.2831 0.315 -- 75.0
X Ray Diffraction 2.4191 2.463 4234 201 3933 0.2748 0.3061 -- 94.0
X Ray Diffraction 2.463 2.5103 4234 213 4021 0.2557 0.2896 -- 93.0
X Ray Diffraction 2.5103 2.5614 4121 207 3914 0.2572 0.303 -- 94.0
X Ray Diffraction 2.5614 2.617 4226 223 4003 0.2506 0.2649 -- 93.0
X Ray Diffraction 2.617 2.6777 4174 220 3954 0.2419 0.2603 -- 94.0
X Ray Diffraction 2.6777 2.7445 4223 201 4022 0.2308 0.2619 -- 94.0
X Ray Diffraction 2.7445 2.8185 4174 181 3993 0.2332 0.2615 -- 95.0
X Ray Diffraction 2.8185 2.9012 4245 202 4043 0.2232 0.233 -- 95.0
X Ray Diffraction 2.9012 2.9946 4221 211 4010 0.2187 0.2588 -- 95.0
X Ray Diffraction 2.9946 3.1012 4214 194 4020 0.2232 0.2566 -- 95.0
X Ray Diffraction 3.1012 3.2249 4222 218 4004 0.2066 0.2473 -- 95.0
X Ray Diffraction 3.2249 3.3709 4221 195 4026 0.1973 0.219 -- 95.0
X Ray Diffraction 3.3709 3.5477 4229 211 4018 0.187 0.201 -- 95.0
X Ray Diffraction 3.5477 3.7685 4240 237 4003 0.1668 0.21 -- 94.0
X Ray Diffraction 3.7685 4.0572 4200 200 4000 0.1547 0.1679 -- 94.0
X Ray Diffraction 4.0572 4.4612 4111 208 3933 0.1341 0.1866 -- 93.0
X Ray Diffraction 4.4612 5.0971 4103 212 3891 0.1273 0.1393 -- 91.0
X Ray Diffraction 5.0971 6.3856 4249 231 4018 0.1503 0.1702 -- 94.0
X Ray Diffraction 6.3856 19.767 3962 207 3755 0.1575 0.2042 -- 87.0
Temperature Factor Modeling
Temperature Factor Value
Isotropic Thermal Model mixed
Mean Isotropic B 56.0
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.004
f_chiral_restr 0.056
f_dihedral_angle_d 14.028
f_angle_d 0.9
f_bond_d 0.004
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 9785
Nucleic Acid Atoms 0
Heterogen Atoms 54
Solvent Atoms 504

Software

Computing
Computing Package Purpose
SBCCOLLECT, HKL3000 Data Collection
HKL-3000 Data Reduction (intensity integration)
HKL-2000 Data Reduction (data scaling)
HKL3000, phenix Structure Solution
PHENIX (phenix.refine: 1.8.1_1161) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: 1.8.1_1161) refinement
phenix model building
HKL3000 model building
HKL3000 data collection
SBCCOLLECT data collection