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X-RAY DIFFRACTION
Materials and Methods page
4IPT
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, SITTING DROP
    pH 6.5
    Temperature 289.0
    Details 0.05M CACL2, 0.1M BIS-TRIS:HCL, 30% (V/V) PEG MME 550, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 51.68 α = 90
    b = 60.76 β = 90
    c = 68.77 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315r
    Details mirror
    Collection Date 2010-11-29
     
    Diffraction Radiation
    Monochromator SI 111 crystal
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 19-ID
    Wavelength List 0.97926
    Site APS
    Beamline 19-ID
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 1.55
    Resolution(Low) 42
    Number Reflections(All) 31918
    Number Reflections(Observed) 31918
    Percent Possible(Observed) 98.7
    R Merge I(Observed) 0.083
    Redundancy 6.7
     
    High Resolution Shell Details
    Resolution(High) 1.55
    Resolution(Low) 1.58
    Percent Possible(All) 99.9
    R Merge I(Observed) 0.667
    Mean I Over Sigma(Observed) 2.7
    Redundancy 6.5
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method SAD
    reflnsShellList 1.546
    Resolution(Low) 41.315
    Cut-off Sigma(F) 1.34
    Number of Reflections(all) 31850
    Number of Reflections(Observed) 31850
    Number of Reflections(R-Free) 1618
    Percent Reflections(Observed) 98.47
    R-Factor(Observed) 0.1882
    R-Work 0.1866
    R-Free 0.2197
     
    Temperature Factor Modeling
    Data Not Available
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.5464
    Shell Resolution(Low) 1.5919
    Number of Reflections(R-Free) 132
    Number of Reflections(R-Work) 2460
    R-Factor(R-Work) 0.2577
    R-Factor(R-Free) 0.339
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.5919
    Shell Resolution(Low) 1.6433
    Number of Reflections(R-Free) 124
    Number of Reflections(R-Work) 2511
    R-Factor(R-Work) 0.2452
    R-Factor(R-Free) 0.3087
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6433
    Shell Resolution(Low) 1.702
    Number of Reflections(R-Free) 127
    Number of Reflections(R-Work) 2530
    R-Factor(R-Work) 0.2311
    R-Factor(R-Free) 0.2654
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.702
    Shell Resolution(Low) 1.7702
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 2532
    R-Factor(R-Work) 0.2014
    R-Factor(R-Free) 0.2681
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7702
    Shell Resolution(Low) 1.8507
    Number of Reflections(R-Free) 149
    Number of Reflections(R-Work) 2508
    R-Factor(R-Work) 0.193
    R-Factor(R-Free) 0.2339
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8507
    Shell Resolution(Low) 1.9483
    Number of Reflections(R-Free) 150
    Number of Reflections(R-Work) 2515
    R-Factor(R-Work) 0.1846
    R-Factor(R-Free) 0.2288
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9483
    Shell Resolution(Low) 2.0704
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2548
    R-Factor(R-Work) 0.1828
    R-Factor(R-Free) 0.2069
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0704
    Shell Resolution(Low) 2.2302
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 2537
    R-Factor(R-Work) 0.179
    R-Factor(R-Free) 0.239
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2302
    Shell Resolution(Low) 2.4546
    Number of Reflections(R-Free) 119
    Number of Reflections(R-Work) 2576
    R-Factor(R-Work) 0.1795
    R-Factor(R-Free) 0.1931
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4546
    Shell Resolution(Low) 2.8098
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 2553
    R-Factor(R-Work) 0.1817
    R-Factor(R-Free) 0.226
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8098
    Shell Resolution(Low) 3.5397
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 2551
    R-Factor(R-Work) 0.1848
    R-Factor(R-Free) 0.2014
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.5397
    Shell Resolution(Low) 41.3294
    Number of Reflections(R-Free) 122
    Number of Reflections(R-Work) 2411
    R-Factor(R-Work) 0.183
    R-Factor(R-Free) 0.2154
    Percent Reflections(Observed) 88.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.004
    f_chiral_restr 0.069
    f_dihedral_angle_d 16.198
    f_angle_d 1.038
    f_bond_d 0.006
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1730
    Nucleic Acid Atoms 0
    Heterogen Atoms 34
    Solvent Atoms 130
     
     
  •   Software and Computing Hide
    Computing
    Data Collection SBC-Collect
    Data Reduction (intensity integration) HKL-3000
    Data Reduction (data scaling) HKL-3000
    Structure Solution SHELXD/MLPHARE/DM/ARP/wARP/HKL3000
    Structure Refinement PHENIX (phenix.refine: 1.8.1_1168)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.8.1_1168)
    model building SHELXD/MLPHARE/DM/ARP/wARP/HKL3000
    data collection SBC-Collect