X-RAY DIFFRACTION Experimental Data & Validation


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Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 6.5
Temperature 293.0
Details 0.2M Sodium Bromide, 0.1M Bis-Tris propane pH 6.5 20% (w/v) PEG 3350, VAPOR DIFFUSION, HANGING DROP, temperature 293K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 36.28 α = 90
b = 85.76 β = 94.52
c = 70.63 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315 -- 2010-07-09
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 19-ID 0.97921 APS 19-ID

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.65 50 100.0 0.067 -- -- -- -- 51768 -3.0 0.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.65 1.68 98.5 -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.65 36.63 -- -- -- 48581 2602 98.86 -- 0.14962 0.14781 0.18207 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.65 1.693 -- 166 3396 0.231 0.287 -- 94.94
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 27.123
Anisotropic B[1][1] -0.31
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] -0.25
Anisotropic B[2][2] -0.03
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 0.29
RMS Deviations
Key Refinement Restraint Deviation
r_scangle_it 9.149
r_scbond_it 5.96
r_mcangle_it 3.882
r_mcbond_other 0.992
r_mcbond_it 2.528
r_gen_planes_other 0.001
r_gen_planes_refined 0.007
r_chiral_restr 0.085
r_dihedral_angle_4_deg 5.143
r_dihedral_angle_3_deg 11.647
r_dihedral_angle_2_deg 42.513
r_dihedral_angle_1_deg 6.072
r_angle_other_deg 0.662
r_angle_refined_deg 1.409
r_bond_other_d 0.0
r_bond_refined_d 0.015
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 3299
Nucleic Acid Atoms 0
Heterogen Atoms 36
Solvent Atoms 263

Software

Computing
Computing Package Purpose
HKL-3000 Data Collection
HKL-3000 Data Reduction (intensity integration)
HKL-3000 Data Reduction (data scaling)
MolRep Structure Solution
REFMAC 5.5.0066 Structure Refinement
Software
Software Name Purpose
REFMAC version: 5.5.0066 refinement
MolRep model building
HKL-3000 data collection