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X-RAY DIFFRACTION
Materials and Methods page
4IM3
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 7
    Temperature 293.0
    Details 4% MPD, 100 mM Hepes pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 141.32 α = 90
    b = 141.32 β = 90
    c = 85.42 γ = 120
     
    Space Group
    Space Group Name:    P 32 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315
    Collection Date 2011-04-06
     
    Diffraction Radiation
    Monochromator MD2 micro-diffractometer
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 24-ID-E
    Wavelength List 0.97925
    Site APS
    Beamline 24-ID-E
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 3.3
    Resolution(Low) 50
    Number Reflections(All) 15314
    Number Reflections(Observed) 13368
    Percent Possible(Observed) 87.3
     
    High Resolution Shell Details
    Resolution(High) 3.3
    Resolution(Low) 3.63
    Percent Possible(All) 51.5
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 3.342
    Resolution(Low) 40.796
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 14554
    Number of Reflections(Observed) 13358
    Number of Reflections(R-Free) 684
    Percent Reflections(Observed) 91.78
    R-Factor(All) 0.2226
    R-Factor(Observed) 0.2226
    R-Work 0.2196
    R-Free 0.2785
    R-Free Selection Details random
     
    Temperature Factor Modeling
    Anisotropic B[1][1] -20.7228
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -20.7228
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 41.4456
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.342
    Shell Resolution(Low) 3.5999
    Number of Reflections(R-Free) 118
    Number of Reflections(R-Work) 1687
    R-Factor(R-Work) 0.3034
    R-Factor(R-Free) 0.4161
    Percent Reflections(Observed) 63.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.5999
    Shell Resolution(Low) 3.9619
    Number of Reflections(R-Free) 160
    Number of Reflections(R-Work) 2695
    R-Factor(R-Work) 0.2473
    R-Factor(R-Free) 0.281
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.9619
    Shell Resolution(Low) 4.5346
    Number of Reflections(R-Free) 128
    Number of Reflections(R-Work) 2742
    R-Factor(R-Work) 0.195
    R-Factor(R-Free) 0.2234
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.5346
    Shell Resolution(Low) 5.7106
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 2755
    R-Factor(R-Work) 0.2013
    R-Factor(R-Free) 0.2643
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.7106
    Shell Resolution(Low) 40.7986
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 2795
    R-Factor(R-Work) 0.2207
    R-Factor(R-Free) 0.2848
    Percent Reflections(Observed) 98.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.005
    f_chiral_restr 0.056
    f_dihedral_angle_d 15.413
    f_angle_d 1.213
    f_bond_d 0.006
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 4849
    Nucleic Acid Atoms 0
    Heterogen Atoms 40
    Solvent Atoms 0
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution CNS
    Structure Refinement PHENIX (phenix.refine: 1.7.3_928)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.7.3_928)
    model building CNS
    data collection HKL-2000