X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 106.14 α = 90
b = 106.14 β = 90
c = 485.19 γ = 90
Symmetry
Space Group I 4 2 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 270 -- 2012-11-01
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON PHOTON FACTORY BEAMLINE BL-17A 1.0000 PHOTON FACTORY BL-17A

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3.2 50 99.5 -- -- -- -- 24235 23406 0.0 0.0 96.43

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
SAD 3.2 40.746 -- 1.34 -- 21373 1109 90.39 -- 0.2229 0.22 0.2762 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 3.2003 3.3458 -- 133 2552 0.2712 0.3349 -- 93.0
X Ray Diffraction 3.3458 3.5222 -- 156 2531 0.2506 0.344 -- 93.0
X Ray Diffraction 3.5222 3.7427 -- 143 2549 0.2226 0.2796 -- 93.0
X Ray Diffraction 3.7427 4.0314 -- 135 2571 0.2146 0.3139 -- 93.0
X Ray Diffraction 4.0314 4.4367 -- 141 2557 0.1897 0.2793 -- 92.0
X Ray Diffraction 4.4367 5.0776 -- 153 2552 0.195 0.2508 -- 91.0
X Ray Diffraction 5.0776 6.3933 -- 144 2547 0.2331 0.265 -- 90.0
X Ray Diffraction 6.3933 40.7492 -- 104 2405 0.2261 0.2509 -- 79.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 68.4184
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.006
f_chiral_restr 0.101
f_dihedral_angle_d 19.98
f_angle_d 1.548
f_bond_d 0.011
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 7460
Nucleic Acid Atoms 814
Heterogen Atoms 0
Solvent Atoms 24

Software

Computing
Computing Package Purpose
ADSC Quantum Data Collection
HKL-2000 Data Reduction (intensity integration)
HKL-2000 Data Reduction (data scaling)
PHENIX Structure Solution
PHENIX (phenix.refine: 1.8.1_1168) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: 1.8.1_1168) refinement
PHENIX model building
ADSC version: Quantum data collection