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X-RAY DIFFRACTION
Materials and Methods page
4IJS
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 106.14 α = 90
    b = 106.14 β = 90
    c = 485.19 γ = 90
     
    Space Group
    Space Group Name:    I 4 2 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 270
    Collection Date 2012-11-01
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type PHOTON FACTORY BEAMLINE BL-17A
    Wavelength List 1.0000
    Site PHOTON FACTORY
    Beamline BL-17A
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 3.2
    Resolution(Low) 50
    Number Reflections(All) 24235
    Number Reflections(Observed) 23406
    Percent Possible(Observed) 99.5
    B(Isotropic) From Wilson Plot 96.43
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method SAD
    reflnsShellList 3.2
    Resolution(Low) 40.746
    Cut-off Sigma(F) 1.34
    Number of Reflections(Observed) 21373
    Number of Reflections(R-Free) 1109
    Percent Reflections(Observed) 90.39
    R-Factor(Observed) 0.2229
    R-Work 0.22
    R-Free 0.2762
     
    Temperature Factor Modeling
    Mean Isotropic B Value 68.4184
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2003
    Shell Resolution(Low) 3.3458
    Number of Reflections(R-Free) 133
    Number of Reflections(R-Work) 2552
    R-Factor(R-Work) 0.2712
    R-Factor(R-Free) 0.3349
    Percent Reflections(Observed) 93.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.3458
    Shell Resolution(Low) 3.5222
    Number of Reflections(R-Free) 156
    Number of Reflections(R-Work) 2531
    R-Factor(R-Work) 0.2506
    R-Factor(R-Free) 0.344
    Percent Reflections(Observed) 93.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.5222
    Shell Resolution(Low) 3.7427
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 2549
    R-Factor(R-Work) 0.2226
    R-Factor(R-Free) 0.2796
    Percent Reflections(Observed) 93.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.7427
    Shell Resolution(Low) 4.0314
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 2571
    R-Factor(R-Work) 0.2146
    R-Factor(R-Free) 0.3139
    Percent Reflections(Observed) 93.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.0314
    Shell Resolution(Low) 4.4367
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 2557
    R-Factor(R-Work) 0.1897
    R-Factor(R-Free) 0.2793
    Percent Reflections(Observed) 92.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.4367
    Shell Resolution(Low) 5.0776
    Number of Reflections(R-Free) 153
    Number of Reflections(R-Work) 2552
    R-Factor(R-Work) 0.195
    R-Factor(R-Free) 0.2508
    Percent Reflections(Observed) 91.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.0776
    Shell Resolution(Low) 6.3933
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 2547
    R-Factor(R-Work) 0.2331
    R-Factor(R-Free) 0.265
    Percent Reflections(Observed) 90.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 6.3933
    Shell Resolution(Low) 40.7492
    Number of Reflections(R-Free) 104
    Number of Reflections(R-Work) 2405
    R-Factor(R-Work) 0.2261
    R-Factor(R-Free) 0.2509
    Percent Reflections(Observed) 79.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.006
    f_chiral_restr 0.101
    f_dihedral_angle_d 19.98
    f_angle_d 1.548
    f_bond_d 0.011
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 7460
    Nucleic Acid Atoms 814
    Heterogen Atoms 0
    Solvent Atoms 24
     
     
  •   Software and Computing Hide
    Computing
    Data Collection ADSC Quantum
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHENIX
    Structure Refinement PHENIX (phenix.refine: 1.8.1_1168)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.8.1_1168)
    model building PHENIX
    data collection ADSC version: Quantum