X-RAY DIFFRACTION Experimental Data & Validation


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Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 8
Temperature 291.0
Details 0.2M LiSO4, 30% PEG5000MME, 0.1M Tris-HCl, 0.88mM ligand, VAPOR DIFFUSION, HANGING DROP, temperature 291K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 56.51 α = 90
b = 127.74 β = 102.01
c = 64.76 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 210r -- 2011-12-09
Diffraction Radiation
Monochromator Protocol
Si SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX1 0.95 AUSTRALIAN SYNCHROTRON MX1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2 19.87 98.3 0.102 0.102 -- -- 59187 59187 0.0 0.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.004 19.867 -- 0.01 -- 56605 2000 94.12 -- 0.1751 0.1734 0.2226 Random
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.004 2.0751 -- 165 4522 0.2588 0.287 -- 79.0
X Ray Diffraction 2.0751 2.1581 -- 192 5233 0.2085 0.2745 -- 90.0
X Ray Diffraction 2.1581 2.2562 -- 199 5419 0.1931 0.2743 -- 94.0
X Ray Diffraction 2.2562 2.375 -- 200 5460 0.1948 0.2584 -- 94.0
X Ray Diffraction 2.375 2.5235 -- 202 5536 0.1832 0.2517 -- 96.0
X Ray Diffraction 2.5235 2.7179 -- 207 5642 0.1827 0.2445 -- 97.0
X Ray Diffraction 2.7179 2.9906 -- 208 5680 0.1877 0.2384 -- 98.0
X Ray Diffraction 2.9906 3.4214 -- 209 5701 0.1715 0.2398 -- 98.0
X Ray Diffraction 3.4214 4.3034 -- 210 5728 0.1454 0.1646 -- 98.0
X Ray Diffraction 4.3034 19.868 -- 208 5684 0.1569 0.1995 -- 97.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] -1.0634
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] -2.4428
Anisotropic B[2][2] -3.9473
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 0.923
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.005
f_chiral_restr 0.09
f_dihedral_angle_d 16.574
f_angle_d 1.287
f_bond_d 0.014
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 6401
Nucleic Acid Atoms 0
Heterogen Atoms 136
Solvent Atoms 284

Software

Computing
Computing Package Purpose
ADSC Quantum Data Collection
XDS Data Reduction (intensity integration)
SCALA Data Reduction (data scaling)
PHASES Structure Solution
PHENIX (phenix.refine: 1.7.3_928) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: 1.7.3_928) refinement
PHASES model building
ADSC version: Quantum data collection