X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Evaporation
pH 5
Temperature 292.0
Details 0.1 M sodium acetate, 1 M sodium formate, pH 5, EVAPORATION, temperature 292K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 131.36 α = 90
b = 134.47 β = 90
c = 203.94 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 110
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD MARMOSAIC 300 mm CCD -- 2009-12-09
Diffraction Radiation
Monochromator Protocol
diamond(111) SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 21-ID-G 0.97586 APS 21-ID-G

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3.35 30 100.0 0.056 -- -- 6.6 52534 52376 1.0 1.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
3.35 3.41 100.0 0.649 -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 3.352 29.958 -- 1.33 -- 52342 2661 99.84 0.22 0.2192 0.2169 0.2607 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 3.352 3.4132 -- 131 2530 0.2696 0.3133 -- 98.0
X Ray Diffraction 3.4132 3.4788 -- 136 2586 0.2494 0.2751 -- 100.0
X Ray Diffraction 3.4788 3.5497 -- 143 2591 0.2377 0.2781 -- 100.0
X Ray Diffraction 3.5497 3.6267 -- 138 2561 0.238 0.2921 -- 100.0
X Ray Diffraction 3.6267 3.7109 -- 150 2568 0.232 0.2937 -- 100.0
X Ray Diffraction 3.7109 3.8036 -- 129 2594 0.232 0.2842 -- 100.0
X Ray Diffraction 3.8036 3.9062 -- 130 2604 0.2301 0.2716 -- 100.0
X Ray Diffraction 3.9062 4.0209 -- 124 2613 0.2233 0.2987 -- 100.0
X Ray Diffraction 4.0209 4.1503 -- 134 2612 0.2096 0.2792 -- 100.0
X Ray Diffraction 4.1503 4.2983 -- 134 2589 0.206 0.2833 -- 100.0
X Ray Diffraction 4.2983 4.4698 -- 148 2621 0.205 0.2648 -- 100.0
X Ray Diffraction 4.4698 4.6725 -- 136 2611 0.1943 0.2106 -- 100.0
X Ray Diffraction 4.6725 4.9179 -- 156 2579 0.1935 0.2484 -- 100.0
X Ray Diffraction 4.9179 5.2245 -- 130 2653 0.201 0.2723 -- 100.0
X Ray Diffraction 5.2245 5.6254 -- 143 2611 0.2216 0.2667 -- 100.0
X Ray Diffraction 5.6254 6.187 -- 137 2647 0.2355 0.2904 -- 100.0
X Ray Diffraction 6.187 7.072 -- 138 2674 0.2391 0.2777 -- 100.0
X Ray Diffraction 7.072 8.8714 -- 162 2667 0.2227 0.2506 -- 100.0
X Ray Diffraction 8.8714 29.9588 -- 162 2770 0.199 0.2183 -- 99.0
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.002
f_chiral_restr 0.046
f_dihedral_angle_d 15.251
f_angle_d 0.71
f_bond_d 0.007
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 23403
Nucleic Acid Atoms 0
Heterogen Atoms 419
Solvent Atoms 397

Software

Computing
Computing Package Purpose
HKL-2000 Data Collection
HKL-2000 Data Reduction (intensity integration)
HKL-2000 Data Reduction (data scaling)
CNS Structure Solution
PHENIX (phenix.refine: 1.8.1_1168) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: 1.8.1_1168) refinement
CNS model building
HKL-2000 data collection