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X-RAY DIFFRACTION
Materials and Methods page
4IJD
  •   Crystallization Hide
    Crystallization Experiments
    Method vapor diffusion hanging drop
    pH 5.5
    Temperature 291.0
    Details 23% PEG 3350, 0.2 M AMMONIUM ACETATE, 0.1 M BisTris pH5.5, vapor diffusion hanging drop, temperature 291K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 54.73 α = 90
    b = 48.78 β = 100.05
    c = 78.71 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315r
    Collection Date 2012-11-23
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 19-ID
    Wavelength List 0.97912
    Site APS
    Beamline 19-ID
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 2.15
    Resolution(Low) 50
    Number Reflections(All) 21804
    Number Reflections(Observed) 21804
    Percent Possible(Observed) 99.9
    R Merge I(Observed) 0.093
    B(Isotropic) From Wilson Plot 39.1
    Redundancy 6.3
     
    High Resolution Shell Details
    Resolution(High) 2.15
    Resolution(Low) 2.2
    Percent Possible(All) 99.7
    R Merge I(Observed) 0.804
    Redundancy 5.2
    Number Unique Reflections(All) 1089
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method SAD
    reflnsShellList 2.15
    Resolution(Low) 36.19
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 21794
    Number of Reflections(Observed) 21794
    Number of Reflections(R-Free) 911
    Percent Reflections(Observed) 99.9
    R-Factor(All) 0.1991
    R-Factor(Observed) 0.1991
    R-Work 0.1964
    R-Free 0.264
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 50.9656
    Anisotropic B[1][1] 0.45
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] -0.35
    Anisotropic B[2][2] 0.56
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -1.13
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.152
    Shell Resolution(Low) 2.208
    Number of Reflections(R-Free) 40
    Number of Reflections(R-Work) 951
    R-Factor(R-Work) 0.231
    R-Factor(R-Free) 0.337
    Percent Reflections(Observed) 60.54
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_gen_planes_other 0.001
    r_gen_planes_refined 0.007
    r_chiral_restr 0.07
    r_dihedral_angle_4_deg 13.537
    r_dihedral_angle_3_deg 13.188
    r_dihedral_angle_2_deg 32.447
    r_dihedral_angle_1_deg 6.84
    r_angle_other_deg 0.719
    r_angle_refined_deg 1.195
    r_bond_other_d 0.001
    r_bond_refined_d 0.011
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 3275
    Nucleic Acid Atoms 0
    Heterogen Atoms 28
    Solvent Atoms 59
     
     
  •   Software and Computing Hide
    Computing
    Data Collection SBCCOLLECT
    Data Reduction (intensity integration) S
    Data Reduction (data scaling) HKL-3000
    Structure Solution SOLVE
    Structure Refinement REFMAC 5.7.0027, COOT 0.6.2
     
    Software
    data extraction pdb_extract version: 3.11
    refinement REFMAC5
    data reduction SCALEPACK