POP-OUT | CLOSE
 
X-RAY DIFFRACTION
Materials and Methods page
4IIN
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION
    Temperature 289.0
    Details 0.2 M potassium acetate, 25% PEG3350, VAPOR DIFFUSION, temperature 289K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 128.92 α = 90
    b = 112.09 β = 90
    c = 70.66 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 210r
    Details MIRRORS
    Collection Date 2012-11-08
     
    Diffraction Radiation
    Monochromator Si(111) channel
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 19-BM
    Wavelength List 0.9792
    Site APS
    Beamline 19-BM
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 2.4
    Resolution(Low) 50
    Number Reflections(Observed) 40094
    Percent Possible(Observed) 97.1
    R Merge I(Observed) 0.089
    B(Isotropic) From Wilson Plot 30.1
    Redundancy 5.5
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.4
    Resolution(Low) 43.87
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 38168
    Number of Reflections(R-Free) 1918
    Percent Reflections(Observed) 93.43
    R-Factor(Observed) 0.2185
    R-Work 0.2166
    R-Free 0.2549
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 23.5555
    Anisotropic B[1][1] 0.36
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 0.19
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.55
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4
    Shell Resolution(Low) 2.462
    Number of Reflections(R-Free) 75
    Number of Reflections(R-Work) 1759
    R-Factor(R-Work) 0.245
    R-Factor(R-Free) 0.284
    Percent Reflections(Observed) 61.75
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_gen_planes_other 0.006
    r_gen_planes_refined 0.008
    r_chiral_restr 0.079
    r_dihedral_angle_4_deg 16.15
    r_dihedral_angle_3_deg 15.504
    r_dihedral_angle_2_deg 35.625
    r_dihedral_angle_1_deg 6.035
    r_angle_other_deg 1.194
    r_angle_refined_deg 1.546
    r_bond_other_d 0.007
    r_bond_refined_d 0.013
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 6963
    Nucleic Acid Atoms 0
    Heterogen Atoms 190
    Solvent Atoms 168
     
     
  •   Software and Computing Hide
    Computing
    Data Collection SBCCOLLECT
    Data Reduction (intensity integration) HKL3000
    Data Reduction (data scaling) HKL3000
    Structure Solution BALBES
    Structure Refinement REFMAC 5.7.0029
     
    Software
    data extraction pdb_extract version: 3.11
    refinement REFMAC5
    data reduction HKL