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X-RAY DIFFRACTION
Materials and Methods page
4IG3
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 6.7
    Temperature 277.0
    Details 11% PEG 8000, 4% PEG 400, 50 MM IMIDAZOLE, 10 MM SPERMINE, 15 MM MGSO4, 100 MM AMMONIUM SULFATE, AND 5 MM TRIS(2-CARBOXYETHYL)PHOSPHINE, PH 6.7, VAPOR DIFFUSION, HANGING DROP, temperature 277K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 161.76 α = 90
    b = 73.07 β = 100.03
    c = 109.03 γ = 90
     
    Space Group
    Space Group Name:    C 1 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 270
    Collection Date 2008-12-20
     
    Diffraction Radiation
    Monochromator SI 111 CHANNEL
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type CHESS BEAMLINE F1
    Wavelength 0.917
    Wavelength List 0.917
    Site CHESS
    Beamline F1
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) -3.0
    Resolution(High) 1.95
    Resolution(Low) 50
    Number Reflections(All) 93525
    Number Reflections(Observed) 91749
    Percent Possible(Observed) 98.1
    R Merge I(Observed) 0.066
     
    High Resolution Shell Details
    Resolution(High) 1.95
    Resolution(Low) 1.98
    Percent Possible(All) 91.0
    R Merge I(Observed) 0.625
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.95
    Resolution(Low) 33.206
    Cut-off Sigma(F) 1.34
    Number of Reflections(Observed) 89653
    Number of Reflections(R-Free) 1791
    Percent Reflections(Observed) 98.08
    R-Factor(Observed) 0.1788
    R-Work 0.1783
    R-Free 0.2029
    R-Free Selection Details 2%
     
    Temperature Factor Modeling
    Data Not Available
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.95
    Shell Resolution(Low) 2.0027
    Number of Reflections(R-Free) 150
    Number of Reflections(R-Work) 6276
    R-Factor(R-Work) 0.2317
    R-Factor(R-Free) 0.2497
    Percent Reflections(Observed) 92.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0027
    Shell Resolution(Low) 2.0616
    Number of Reflections(R-Free) 121
    Number of Reflections(R-Work) 6523
    R-Factor(R-Work) 0.218
    R-Factor(R-Free) 0.2706
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0616
    Shell Resolution(Low) 2.1282
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 6535
    R-Factor(R-Work) 0.2
    R-Factor(R-Free) 0.2609
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1282
    Shell Resolution(Low) 2.2042
    Number of Reflections(R-Free) 118
    Number of Reflections(R-Work) 6697
    R-Factor(R-Work) 0.1951
    R-Factor(R-Free) 0.23
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2042
    Shell Resolution(Low) 2.2925
    Number of Reflections(R-Free) 111
    Number of Reflections(R-Work) 6753
    R-Factor(R-Work) 0.1892
    R-Factor(R-Free) 0.2047
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2925
    Shell Resolution(Low) 2.3968
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 6812
    R-Factor(R-Work) 0.1935
    R-Factor(R-Free) 0.2116
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3968
    Shell Resolution(Low) 2.5231
    Number of Reflections(R-Free) 147
    Number of Reflections(R-Work) 6831
    R-Factor(R-Work) 0.1931
    R-Factor(R-Free) 0.2368
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5231
    Shell Resolution(Low) 2.6811
    Number of Reflections(R-Free) 152
    Number of Reflections(R-Work) 6807
    R-Factor(R-Work) 0.1866
    R-Factor(R-Free) 0.2073
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6811
    Shell Resolution(Low) 2.888
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 6878
    R-Factor(R-Work) 0.1827
    R-Factor(R-Free) 0.2195
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.888
    Shell Resolution(Low) 3.1784
    Number of Reflections(R-Free) 156
    Number of Reflections(R-Work) 6884
    R-Factor(R-Work) 0.1879
    R-Factor(R-Free) 0.2223
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1784
    Shell Resolution(Low) 3.6378
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 6900
    R-Factor(R-Work) 0.1685
    R-Factor(R-Free) 0.1915
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.6378
    Shell Resolution(Low) 4.5814
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 6942
    R-Factor(R-Work) 0.15
    R-Factor(R-Free) 0.1536
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.5814
    Shell Resolution(Low) 33.2112
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 7024
    R-Factor(R-Work) 0.1741
    R-Factor(R-Free) 0.1965
    Percent Reflections(Observed) 99.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.009
    f_chiral_restr 0.102
    f_dihedral_angle_d 14.298
    f_angle_d 1.445
    f_bond_d 0.01
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 7955
    Nucleic Acid Atoms 0
    Heterogen Atoms 116
    Solvent Atoms 911
     
     
  •   Software and Computing Hide
    Computing
    Data Collection ADX
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHENIX (phenix.refine: dev_1233)
    Structure Refinement PHENIX (phenix.refine: dev_1233)
     
    Software
    refinement PHENIX version: (phenix.refine: dev_1233)
    model building PHENIX version: (phenix.refine: dev_1233)
    data collection ADX