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X-RAY DIFFRACTION
Materials and Methods page
4IG1
  •   Crystallization Hide
    Crystallization Experiments
    Method hanging-drop vapor diffusion
    pH 6.5
    Temperature 293.0
    Details 0.1 M MES, 0.8 M sodium acetate, 0.1 M NaCl, 20% (w/v) ethylene glycol, pH 6.5, hanging-drop vapor diffusion, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 117 α = 90
    b = 46.89 β = 102.49
    c = 57.47 γ = 90
     
    Space Group
    Space Group Name:    C 1 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315
    Details monochromator
    Collection Date 2012-10-18
     
    Diffraction Radiation
    Monochromator SAGITALLY FOCUSED Si(111)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source synchrotron
    Type APS BEAMLINE 19-ID
    Wavelength List 0.97000
    Site APS
    Beamline 19-ID
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 1.0
    Observed Criterion Sigma(I) 1.0
    Resolution(High) 1.43
    Resolution(Low) 50
    Number Reflections(All) 53906
    Number Reflections(Observed) 53906
    Percent Possible(Observed) 99.4
    R Merge I(Observed) 0.06
    Redundancy 3.7
     
    High Resolution Shell Details
    Resolution(High) 1.43
    Resolution(Low) 1.48
    Percent Possible(All) 96.7
    R Merge I(Observed) 0.559
    Redundancy 3.2
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method FOURIER SYNTHESIS
    reflnsShellList 1.4318
    Resolution(Low) 28.558
    Cut-off Sigma(F) 1.36
    Number of Reflections(all) 53481
    Number of Reflections(Observed) 53888
    Number of Reflections(R-Free) 2731
    Percent Reflections(Observed) 95.97
    R-Factor(Observed) 0.1789
    R-Work 0.1773
    R-Free 0.2107
     
    Temperature Factor Modeling
    Mean Isotropic B Value 28.5903
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.4318
    Shell Resolution(Low) 1.4565
    Number of Reflections(R-Free) 43
    Number of Reflections(R-Work) 808
    R-Factor(R-Work) 0.298
    R-Factor(R-Free) 0.3541
    Percent Reflections(Observed) 31.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.4565
    Shell Resolution(Low) 1.483
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 2506
    R-Factor(R-Work) 0.2573
    R-Factor(R-Free) 0.2776
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.483
    Shell Resolution(Low) 1.5115
    Number of Reflections(R-Free) 152
    Number of Reflections(R-Work) 2637
    R-Factor(R-Work) 0.2394
    R-Factor(R-Free) 0.2975
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.5115
    Shell Resolution(Low) 1.5424
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 2631
    R-Factor(R-Work) 0.2175
    R-Factor(R-Free) 0.239
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.5424
    Shell Resolution(Low) 1.5759
    Number of Reflections(R-Free) 166
    Number of Reflections(R-Work) 2645
    R-Factor(R-Work) 0.2068
    R-Factor(R-Free) 0.232
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.5759
    Shell Resolution(Low) 1.6126
    Number of Reflections(R-Free) 128
    Number of Reflections(R-Work) 2681
    R-Factor(R-Work) 0.203
    R-Factor(R-Free) 0.2294
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6126
    Shell Resolution(Low) 1.6529
    Number of Reflections(R-Free) 148
    Number of Reflections(R-Work) 2617
    R-Factor(R-Work) 0.1971
    R-Factor(R-Free) 0.255
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6529
    Shell Resolution(Low) 1.6976
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 2639
    R-Factor(R-Work) 0.1847
    R-Factor(R-Free) 0.2437
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6976
    Shell Resolution(Low) 1.7475
    Number of Reflections(R-Free) 152
    Number of Reflections(R-Work) 2658
    R-Factor(R-Work) 0.1847
    R-Factor(R-Free) 0.23
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7475
    Shell Resolution(Low) 1.8039
    Number of Reflections(R-Free) 120
    Number of Reflections(R-Work) 2686
    R-Factor(R-Work) 0.1873
    R-Factor(R-Free) 0.2406
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8039
    Shell Resolution(Low) 1.8684
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 2630
    R-Factor(R-Work) 0.1798
    R-Factor(R-Free) 0.2321
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8684
    Shell Resolution(Low) 1.9432
    Number of Reflections(R-Free) 148
    Number of Reflections(R-Work) 2646
    R-Factor(R-Work) 0.1769
    R-Factor(R-Free) 0.2054
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9432
    Shell Resolution(Low) 2.0316
    Number of Reflections(R-Free) 130
    Number of Reflections(R-Work) 2659
    R-Factor(R-Work) 0.1644
    R-Factor(R-Free) 0.1938
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0316
    Shell Resolution(Low) 2.1387
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 2647
    R-Factor(R-Work) 0.168
    R-Factor(R-Free) 0.2031
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1387
    Shell Resolution(Low) 2.2726
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 2645
    R-Factor(R-Work) 0.1608
    R-Factor(R-Free) 0.1758
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2726
    Shell Resolution(Low) 2.448
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 2681
    R-Factor(R-Work) 0.1603
    R-Factor(R-Free) 0.1884
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.448
    Shell Resolution(Low) 2.6942
    Number of Reflections(R-Free) 151
    Number of Reflections(R-Work) 2652
    R-Factor(R-Work) 0.1673
    R-Factor(R-Free) 0.1843
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6942
    Shell Resolution(Low) 3.0836
    Number of Reflections(R-Free) 122
    Number of Reflections(R-Work) 2706
    R-Factor(R-Work) 0.1737
    R-Factor(R-Free) 0.2067
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0836
    Shell Resolution(Low) 3.8835
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 2709
    R-Factor(R-Work) 0.1732
    R-Factor(R-Free) 0.207
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.8835
    Shell Resolution(Low) 28.5634
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2674
    R-Factor(R-Work) 0.1775
    R-Factor(R-Free) 0.2144
    Percent Reflections(Observed) 96.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.006
    f_chiral_restr 0.076
    f_dihedral_angle_d 12.104
    f_angle_d 1.28
    f_bond_d 0.014
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2505
    Nucleic Acid Atoms 0
    Heterogen Atoms 29
    Solvent Atoms 256
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-3000
    Data Reduction (intensity integration) HKL
    Data Reduction (data scaling) HKL-3000
    Structure Solution PHENIX
    Structure Refinement PHENIX (phenix.refine: 1.8.1_1168)
     
    Software
    data extraction pdb_extract version: 3.11
    refinement phenix
    data reduction SCALEPACK