X-RAY DIFFRACTION Experimental Data & Validation


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Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 7
Temperature 293.0
Details 0.1 M imidazole, pH 7.0, 20% v/v Jeffamine ED-2001, VAPOR DIFFUSION, HANGING DROP, temperature 293K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 49.69 α = 90
b = 115.78 β = 90
c = 181.13 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 210 -- 2012-03-03
Diffraction Radiation
Monochromator Protocol
Si(111) SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON CHESS BEAMLINE A1 0.987 CHESS A1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.2 50 90.3 -- 0.101 -- 7.0 53078 47929 1.0 1.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.2 2.28 41.7 -- 0.593 1.9 4.6 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.252 47.918 -- 0.0 53078 47830 1998 94.78 0.1748 0.1748 0.1729 0.2176 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.252 2.3086 -- 123 2831 0.2385 0.3029 -- 84.0
X Ray Diffraction 2.3086 2.371 -- 136 3109 0.2157 0.2937 -- 90.0
X Ray Diffraction 2.371 2.4408 -- 134 3082 0.21 0.2693 -- 92.0
X Ray Diffraction 2.4408 2.5195 -- 137 3138 0.2022 0.2536 -- 91.0
X Ray Diffraction 2.5195 2.6096 -- 137 3158 0.1982 0.2598 -- 93.0
X Ray Diffraction 2.6096 2.7141 -- 138 3146 0.2004 0.2274 -- 93.0
X Ray Diffraction 2.7141 2.8376 -- 140 3212 0.2006 0.2552 -- 94.0
X Ray Diffraction 2.8376 2.9871 -- 143 3295 0.1987 0.2587 -- 96.0
X Ray Diffraction 2.9871 3.1743 -- 146 3351 0.1961 0.2639 -- 98.0
X Ray Diffraction 3.1743 3.4193 -- 149 3398 0.1739 0.2442 -- 98.0
X Ray Diffraction 3.4193 3.7633 -- 150 3454 0.1626 0.1897 -- 99.0
X Ray Diffraction 3.7633 4.3075 -- 151 3466 0.1369 0.1847 -- 99.0
X Ray Diffraction 4.3075 5.4258 -- 154 3519 0.1385 0.1755 -- 100.0
X Ray Diffraction 5.4258 47.9285 -- 160 3673 0.1634 0.179 -- 99.0
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.003
f_chiral_restr 0.067
f_dihedral_angle_d 15.783
f_angle_d 0.979
f_bond_d 0.006
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 6752
Nucleic Acid Atoms 0
Heterogen Atoms 66
Solvent Atoms 364

Software

Computing
Computing Package Purpose
HKL-2000 Data Collection
HKL-2000 Data Reduction (intensity integration)
HKL-2000 Data Reduction (data scaling)
Phenix, phaser Structure Solution
PHENIX (phenix.refine: 1.8.1_1168) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: 1.8.1_1168) refinement
phaser model building
Phenix model building
HKL-2000 data collection