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X-RAY DIFFRACTION
Materials and Methods page
4ID7
  •   Crystallization Hide
    Crystallization Experiments
    Method ligang replacement
    Details ligang replacement
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 94.66 α = 90
    b = 94.66 β = 90
    c = 187.27 γ = 90
     
    Space Group
    Space Group Name:    I 4 2 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector PIXEL
    Type DECTRIS PILATUS 2M-F
    Collection Date 2012-04-10
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SLS BEAMLINE X06DA
    Wavelength 1.00001
    Wavelength List 1.00001
    Site SLS
    Beamline X06DA
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 3
    Resolution(Low) 93.63
    Number Reflections(Observed) 8897
    Percent Possible(Observed) 90.5
    R Merge I(Observed) 0.088
    Redundancy 5.0
     
    High Resolution Shell Details
    Resolution(High) 3.0
    Resolution(Low) 3.24
    Percent Possible(All) 91.9
    R Merge I(Observed) 0.443
    Mean I Over Sigma(Observed) 1.7
    Redundancy 5.1
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method OTHER
    reflnsShellList 3.0
    Resolution(Low) 46.81
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 7925
    Number of Reflections(R-Free) 528
    Percent Reflections(Observed) 89.07
    R-Factor(Observed) 0.2133
    R-Work 0.2101
    R-Free 0.2592
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 81.704
    Anisotropic B[1][1] 2.39
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 2.39
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -4.78
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.002
    Shell Resolution(Low) 3.08
    Number of Reflections(R-Free) 42
    Number of Reflections(R-Work) 527
    R-Factor(R-Work) 0.329
    R-Factor(R-Free) 0.39
    Percent Reflections(Observed) 90.03
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 3.476
    r_scbond_it 2.155
    r_mcangle_it 1.617
    r_mcbond_other 0.117
    r_bond_refined_d 0.008
    r_bond_other_d 0.001
    r_angle_refined_deg 1.028
    r_angle_other_deg 0.971
    r_dihedral_angle_1_deg 5.415
    r_dihedral_angle_2_deg 34.083
    r_dihedral_angle_3_deg 14.363
    r_dihedral_angle_4_deg 12.521
    r_chiral_restr 0.059
    r_gen_planes_refined 0.003
    r_gen_planes_other 0.001
    r_mcbond_it 0.856
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2153
    Nucleic Acid Atoms 0
    Heterogen Atoms 33
    Solvent Atoms 6
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) SCALA
    Structure Refinement REFMAC 5.5.0109
     
    Software
    data extraction pdb_extract version: 3.11
    refinement REFMAC5 version: 5.5.0109