POP-OUT | CLOSE

An Information Portal to 109093 Biological Macromolecular Structures

X-RAY DIFFRACTION
Materials and Methods page
4I77
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, SITTING DROP
    pH 8
    Temperature 291.0
    Details 15% w/v PEG1000, 0.05 M sodium malonate, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 291K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 83.72 α = 90
    b = 64.77 β = 106.09
    c = 117.1 γ = 90
     
    Space Group
    Space Group Name:    C 1 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 110
     
    Diffraction Detector
    Detector AREA DETECTOR
    Type ADSC QUANTUM 315r
    Collection Date 2011-12-01
     
    Diffraction Radiation
    Monochromator Si(111)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ALS BEAMLINE 5.0.2
    Wavelength List 1.0
    Site ALS
    Beamline 5.0.2
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 1.9
    Resolution(Low) 29.12
    Number Reflections(All) 46433
    Number Reflections(Observed) 46431
    Percent Possible(Observed) 97.6
    B(Isotropic) From Wilson Plot 31.39
    Redundancy 3.7
     
    High Resolution Shell Details
    Resolution(High) 1.9
    Percent Possible(All) 92.1
    Mean I Over Sigma(Observed) 2.0
    R-Sym I(Observed) 0.517
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.9
    Resolution(Low) 29.12
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 46433
    Number of Reflections(Observed) 46431
    Number of Reflections(R-Free) 944
    Percent Reflections(Observed) 97.58
    R-Factor(Observed) 0.1798
    R-Work 0.1791
    R-Free 0.2189
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 49.01
    Anisotropic B[1][1] -5.0878
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 4.5221
    Anisotropic B[2][2] -1.4082
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 6.4961
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9
    Shell Resolution(Low) 1.95
    Number of Reflections(R-Free) 61
    Number of Reflections(R-Work) 2817
    R-Factor(R-Work) 0.2232
    R-Factor(R-Free) 0.2014
    Percent Reflections(Observed) 97.58
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    t_other_torsion 18.61
    t_omega_torsion 3.81
    t_angle_deg 1.17
    t_bond_d 0.01
     
    Coordinate Error
    Luzzati ESD(Observed) 0.286
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 4068
    Nucleic Acid Atoms 0
    Heterogen Atoms 0
    Solvent Atoms 378
     
     
  •   Software and Computing Hide
    Computing
    Data Collection BOS
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) SCALEPACK
    Structure Solution PHASER
    Structure Refinement BUSTER 2.11.2
     
    Software
    refinement BUSTER version: 2.11.2
    model building PHASER
    data collection BOS