X-RAY DIFFRACTION Experimental Data & Validation


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Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
pH 7.5
Temperature 297.0
Details 0.1 HEPES:NaOH, 25% (w/v) PEG 3350, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 297K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 81.22 α = 90
b = 111.25 β = 90
c = 147.15 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315r mirror 2010-12-07
Diffraction Radiation
Monochromator Protocol
Si 111 crystal SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 19-ID 0.97915 APS 19-ID

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.14 46 98.8 0.112 -- -- 6.0 73652 73652 0.0 0.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.15 2.19 90.2 0.665 -- 2.6 3.7 3289

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
SAD 2.137 45.893 -- 1.34 73465 73465 3711 98.58 0.1705 0.1705 0.1679 0.2181 random
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.1367 2.1637 -- 121 2185 0.2079 0.3036 -- 86.0
X Ray Diffraction 2.1637 2.1922 -- 112 2415 0.2062 0.2687 -- 92.0
X Ray Diffraction 2.1922 2.2222 -- 126 2435 0.2024 0.2841 -- 94.0
X Ray Diffraction 2.2222 2.254 -- 122 2501 0.2057 0.3087 -- 96.0
X Ray Diffraction 2.254 2.2876 -- 135 2520 0.204 0.2426 -- 98.0
X Ray Diffraction 2.2876 2.3233 -- 135 2588 0.2043 0.2903 -- 99.0
X Ray Diffraction 2.3233 2.3614 -- 152 2556 0.2125 0.3199 -- 100.0
X Ray Diffraction 2.3614 2.4022 -- 149 2611 0.199 0.2532 -- 100.0
X Ray Diffraction 2.4022 2.4458 -- 124 2568 0.196 0.2927 -- 100.0
X Ray Diffraction 2.4458 2.4929 -- 126 2626 0.1949 0.2521 -- 100.0
X Ray Diffraction 2.4929 2.5438 -- 135 2617 0.1914 0.2782 -- 100.0
X Ray Diffraction 2.5438 2.5991 -- 133 2611 0.1881 0.2526 -- 100.0
X Ray Diffraction 2.5991 2.6595 -- 132 2572 0.1881 0.276 -- 100.0
X Ray Diffraction 2.6595 2.726 -- 130 2638 0.1893 0.2668 -- 100.0
X Ray Diffraction 2.726 2.7997 -- 131 2595 0.1853 0.271 -- 100.0
X Ray Diffraction 2.7997 2.8821 -- 146 2600 0.1866 0.2272 -- 100.0
X Ray Diffraction 2.8821 2.9751 -- 127 2605 0.1943 0.2436 -- 100.0
X Ray Diffraction 2.9751 3.0814 -- 145 2611 0.1966 0.2783 -- 100.0
X Ray Diffraction 3.0814 3.2047 -- 129 2640 0.1862 0.2371 -- 100.0
X Ray Diffraction 3.2047 3.3506 -- 159 2612 0.1817 0.2293 -- 100.0
X Ray Diffraction 3.3506 3.5271 -- 158 2601 0.1745 0.2229 -- 100.0
X Ray Diffraction 3.5271 3.748 -- 119 2639 0.1583 0.2066 -- 100.0
X Ray Diffraction 3.748 4.0373 -- 147 2650 0.1365 0.176 -- 100.0
X Ray Diffraction 4.0373 4.4433 -- 138 2661 0.1228 0.1713 -- 100.0
X Ray Diffraction 4.4433 5.0855 -- 145 2680 0.1192 0.1615 -- 100.0
X Ray Diffraction 5.0855 6.4044 -- 162 2664 0.1698 0.1759 -- 100.0
X Ray Diffraction 6.4044 45.9035 -- 173 2753 0.1543 0.1767 -- 98.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] -3.5757
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 5.0944
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -1.5187
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.005
f_chiral_restr 0.073
f_dihedral_angle_d 14.119
f_angle_d 1.072
f_bond_d 0.007
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 10347
Nucleic Acid Atoms 0
Heterogen Atoms 71
Solvent Atoms 394

Software

Computing
Computing Package Purpose
SBC-Collect Data Collection
HKL-3000 Data Reduction (intensity integration)
HKL-3000 Data Reduction (data scaling)
SHELXD/MLPHARE/DM/ARP/wARP/HKL3000 Structure Solution
PHENIX (phenix.refine: 1.7.1_743) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: 1.7.1_743) refinement
SHELXD/MLPHARE/DM/ARP/wARP/HKL3000 model building
SBC-Collect data collection