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X-RAY DIFFRACTION
Materials and Methods page
4I69
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 49.22 α = 90
    b = 49.22 β = 90
    c = 78.83 γ = 120
     
    Space Group
    Space Group Name:    P 31
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector PIXEL
    Type DECTRIS PILATUS 2M-F
    Collection Date 2012-07-25
     
    Diffraction Radiation
    Monochromator Si(111)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SLS BEAMLINE X06DA
    Wavelength List 1.0097
    Site SLS
    Beamline X06DA
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 1.79
    Resolution(Low) 78.8
    Number Reflections(Observed) 19275
    Percent Possible(Observed) 95.6
    R Merge I(Observed) 0.092
    B(Isotropic) From Wilson Plot 23.5
    Redundancy 3.3
     
    High Resolution Shell Details
    Resolution(High) 1.79
    Resolution(Low) 1.9
    R Merge I(Observed) 0.587
    Mean I Over Sigma(Observed) 1.1
    R-Sym I(Observed) 0.587
    Redundancy 1.7
    Number Unique Reflections(All) 2381
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.79
    Resolution(Low) 42.627
    Cut-off Sigma(F) 1.96
    Number of Reflections(Observed) 19095
    Number of Reflections(R-Free) 1016
    Percent Reflections(Observed) 94.89
    R-Factor(Observed) 0.2004
    R-Work 0.1953
    R-Free 0.2448
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Data Not Available
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.79
    Shell Resolution(Low) 1.8879
    Number of Reflections(R-Free) 108
    Number of Reflections(R-Work) 2172
    R-Factor(R-Work) 0.3216
    R-Factor(R-Free) 0.3252
    Percent Reflections(Observed) 75.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8879
    Shell Resolution(Low) 2.0062
    Number of Reflections(R-Free) 113
    Number of Reflections(R-Work) 2394
    R-Factor(R-Work) 0.3333
    R-Factor(R-Free) 0.3365
    Percent Reflections(Observed) 85.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0062
    Shell Resolution(Low) 2.1611
    Number of Reflections(R-Free) 164
    Number of Reflections(R-Work) 2703
    R-Factor(R-Work) 0.2394
    R-Factor(R-Free) 0.2554
    Percent Reflections(Observed) 94.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1611
    Shell Resolution(Low) 2.3786
    Number of Reflections(R-Free) 161
    Number of Reflections(R-Work) 2647
    R-Factor(R-Work) 0.265
    R-Factor(R-Free) 0.2894
    Percent Reflections(Observed) 92.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3786
    Shell Resolution(Low) 2.7227
    Number of Reflections(R-Free) 159
    Number of Reflections(R-Work) 2713
    R-Factor(R-Work) 0.2089
    R-Factor(R-Free) 0.2561
    Percent Reflections(Observed) 94.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7227
    Shell Resolution(Low) 3.4301
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2697
    R-Factor(R-Work) 0.1816
    R-Factor(R-Free) 0.2359
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.4301
    Shell Resolution(Low) 42.6387
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2727
    R-Factor(R-Work) 0.1372
    R-Factor(R-Free) 0.1993
    Percent Reflections(Observed) 95.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.006
    f_chiral_restr 0.051
    f_dihedral_angle_d 12.924
    f_angle_d 1.31
    f_bond_d 0.01
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1943
    Nucleic Acid Atoms 0
    Heterogen Atoms 4
    Solvent Atoms 65
     
     
  •   Software and Computing Hide
    Computing
    Data Collection beamline software
    Data Reduction (intensity integration) MOSFLM
    Data Reduction (data scaling) SCALA
    Structure Solution PHASER
    Structure Refinement PHENIX (phenix.refine: dev_1223)
     
    Software
    refinement PHENIX version: (phenix.refine: dev_1223)
    model building PHASER
    data collection beamline version: software