X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 49.22 α = 90
b = 49.22 β = 90
c = 78.83 γ = 120
Symmetry
Space Group P 31

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 2M-F -- 2012-07-25
Diffraction Radiation
Monochromator Protocol
Si(111) SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SLS BEAMLINE X06DA 1.0097 SLS X06DA

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.79 78.8 95.6 0.092 0.092 -- 3.3 -- 19275 0.0 0.0 23.5
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.79 1.9 -- 0.587 0.587 1.1 1.7 2381

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.79 42.627 -- 1.96 -- 19095 1016 94.89 -- 0.2004 0.1953 0.2448 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.79 1.8879 -- 108 2172 0.3216 0.3252 -- 75.0
X Ray Diffraction 1.8879 2.0062 -- 113 2394 0.3333 0.3365 -- 85.0
X Ray Diffraction 2.0062 2.1611 -- 164 2703 0.2394 0.2554 -- 94.0
X Ray Diffraction 2.1611 2.3786 -- 161 2647 0.265 0.2894 -- 92.0
X Ray Diffraction 2.3786 2.7227 -- 159 2713 0.2089 0.2561 -- 94.0
X Ray Diffraction 2.7227 3.4301 -- 136 2697 0.1816 0.2359 -- 95.0
X Ray Diffraction 3.4301 42.6387 -- 136 2727 0.1372 0.1993 -- 95.0
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.006
f_chiral_restr 0.051
f_dihedral_angle_d 12.924
f_angle_d 1.31
f_bond_d 0.01
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 1943
Nucleic Acid Atoms 0
Heterogen Atoms 4
Solvent Atoms 65

Software

Computing
Computing Package Purpose
beamline software Data Collection
MOSFLM Data Reduction (intensity integration)
SCALA Data Reduction (data scaling)
PHASER Structure Solution
PHENIX (phenix.refine: dev_1223) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: dev_1223) refinement
PHASER model building
beamline version: software data collection