X-RAY DIFFRACTION Experimental Data & Validation


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Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
pH 6.7
Temperature 293.0
Details 3% PEG 4000, 4-6% glycerol, 30 mM magnesium chloride, 30 mM calcium chloride, 100 mM MES/Imidazole , pH 6.7, VAPOR DIFFUSION, SITTING DROP, temperature 293K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 104.16 α = 90
b = 156.47 β = 90
c = 181.49 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 6M -- 2012-02-03
Diffraction Radiation
Monochromator Protocol
LN2 cooled fixed-exit Si(111) monochromator, Sagittally - horizontally focussed SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SLS BEAMLINE X06SA 0.99995 SLS X06SA

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.2 71.84 99.2 0.094 -- -- 13.2 149411 149411 0.0 0.0 45.7
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.2 2.26 93.9 -- -- 2.2 11.9 10355

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.2 71.844 -- -- 149390 149390 7514 99.23 0.1695 0.1695 0.1675 0.2077 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.2 2.225 -- 227 4223 0.2523 0.2847 -- 90.0
X Ray Diffraction 2.225 2.2512 -- 239 4573 0.2477 0.3209 -- 97.0
X Ray Diffraction 2.2512 2.2786 -- 240 4669 0.244 0.307 -- 99.0
X Ray Diffraction 2.2786 2.3075 -- 272 4673 0.2309 0.2661 -- 99.0
X Ray Diffraction 2.3075 2.3379 -- 248 4664 0.2179 0.2639 -- 99.0
X Ray Diffraction 2.3379 2.3699 -- 259 4695 0.2122 0.2678 -- 99.0
X Ray Diffraction 2.3699 2.4037 -- 251 4704 0.2089 0.2684 -- 100.0
X Ray Diffraction 2.4037 2.4396 -- 256 4706 0.2117 0.2742 -- 99.0
X Ray Diffraction 2.4396 2.4777 -- 253 4674 0.1994 0.2748 -- 99.0
X Ray Diffraction 2.4777 2.5184 -- 242 4707 0.2045 0.2766 -- 100.0
X Ray Diffraction 2.5184 2.5618 -- 253 4680 0.2095 0.2899 -- 99.0
X Ray Diffraction 2.5618 2.6084 -- 252 4740 0.1976 0.2512 -- 99.0
X Ray Diffraction 2.6084 2.6586 -- 231 4713 0.1936 0.2315 -- 100.0
X Ray Diffraction 2.6586 2.7128 -- 242 4695 0.1944 0.2454 -- 99.0
X Ray Diffraction 2.7128 2.7718 -- 283 4673 0.1861 0.2399 -- 100.0
X Ray Diffraction 2.7718 2.8363 -- 257 4748 0.1795 0.2456 -- 100.0
X Ray Diffraction 2.8363 2.9072 -- 217 4758 0.1779 0.2236 -- 100.0
X Ray Diffraction 2.9072 2.9858 -- 235 4769 0.1687 0.2309 -- 100.0
X Ray Diffraction 2.9858 3.0737 -- 245 4767 0.1647 0.204 -- 100.0
X Ray Diffraction 3.0737 3.1729 -- 245 4739 0.1729 0.2177 -- 100.0
X Ray Diffraction 3.1729 3.2863 -- 225 4768 0.1779 0.2394 -- 100.0
X Ray Diffraction 3.2863 3.4179 -- 285 4728 0.1743 0.2229 -- 100.0
X Ray Diffraction 3.4179 3.5734 -- 260 4779 0.1634 0.2189 -- 100.0
X Ray Diffraction 3.5734 3.7618 -- 250 4766 0.158 0.1694 -- 100.0
X Ray Diffraction 3.7618 3.9975 -- 249 4809 0.1499 0.1935 -- 100.0
X Ray Diffraction 3.9975 4.3061 -- 248 4801 0.132 0.1759 -- 100.0
X Ray Diffraction 4.3061 4.7394 -- 251 4852 0.1192 0.1455 -- 100.0
X Ray Diffraction 4.7394 5.425 -- 273 4812 0.1299 0.154 -- 100.0
X Ray Diffraction 5.425 6.834 -- 242 4918 0.1753 0.2176 -- 100.0
X Ray Diffraction 6.834 71.8824 -- 284 5073 0.1819 0.1969 -- 100.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] 6.9646
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 7.1804
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -0.397
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.005
f_chiral_restr 0.063
f_dihedral_angle_d 16.565
f_angle_d 1.111
f_bond_d 0.008
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 17470
Nucleic Acid Atoms 0
Heterogen Atoms 187
Solvent Atoms 765

Software

Computing
Computing Package Purpose
REMDAQ Data Collection
XDS Data Reduction (intensity integration)
XDS Data Reduction (data scaling)
PHASER Structure Solution
PHENIX (phenix.refine: 1.7.3_928) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: 1.7.3_928) refinement
PHASER model building
REMDAQ data collection