X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 8.5
Temperature 293.0
Details 0.1 M Tris-HCl, 0.2 M magnesium chloride, 25% PEG4000, 0.2 M 1-butyl-3-methylimidazolium chloride, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 65.42 α = 90
b = 70.03 β = 106.84
c = 71.83 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 210 -- 2011-06-22
Diffraction Radiation
Monochromator Protocol
Diamond(001) SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ESRF BEAMLINE ID14-1 0.93340 ESRF ID14-1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.77 30 98.0 0.074 -- -- 3.4 59260 59260 1.0 1.0 19.8
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.77 1.87 97.0 0.355 -- 3.2 3.4 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.77 24.635 -- 1.36 59224 59224 2997 97.77 -- 0.1786 0.1764 0.2197 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.77 1.799 -- 140 2647 0.2473 0.3046 -- 97.0
X Ray Diffraction 1.799 1.83 -- 155 2591 0.2353 0.2812 -- 96.0
X Ray Diffraction 1.83 1.8633 -- 139 2653 0.2171 0.2841 -- 97.0
X Ray Diffraction 1.8633 1.8991 -- 160 2624 0.2048 0.2497 -- 97.0
X Ray Diffraction 1.8991 1.9379 -- 121 2659 0.1828 0.2607 -- 97.0
X Ray Diffraction 1.9379 1.98 -- 150 2647 0.1768 0.2276 -- 97.0
X Ray Diffraction 1.98 2.026 -- 143 2631 0.1754 0.2338 -- 98.0
X Ray Diffraction 2.026 2.0767 -- 114 2721 0.1707 0.2372 -- 98.0
X Ray Diffraction 2.0767 2.1328 -- 128 2679 0.1685 0.23 -- 98.0
X Ray Diffraction 2.1328 2.1955 -- 149 2654 0.1728 0.2429 -- 98.0
X Ray Diffraction 2.1955 2.2664 -- 138 2661 0.171 0.2058 -- 98.0
X Ray Diffraction 2.2664 2.3473 -- 154 2687 0.1717 0.229 -- 98.0
X Ray Diffraction 2.3473 2.4412 -- 146 2642 0.1754 0.2021 -- 98.0
X Ray Diffraction 2.4412 2.5522 -- 130 2704 0.1737 0.2107 -- 98.0
X Ray Diffraction 2.5522 2.6866 -- 131 2712 0.1707 0.2504 -- 98.0
X Ray Diffraction 2.6866 2.8547 -- 165 2667 0.1884 0.2324 -- 98.0
X Ray Diffraction 2.8547 3.0747 -- 153 2695 0.1813 0.2169 -- 99.0
X Ray Diffraction 3.0747 3.3834 -- 135 2705 0.1851 0.2159 -- 99.0
X Ray Diffraction 3.3834 3.8714 -- 147 2742 0.1652 0.2071 -- 99.0
X Ray Diffraction 3.8714 4.8714 -- 143 2720 0.1445 0.1609 -- 99.0
X Ray Diffraction 4.8714 24.6372 -- 156 2786 0.1848 0.2209 -- 98.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] 0.2061
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.2489
Anisotropic B[2][2] 0.2074
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -0.4135
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.005
f_chiral_restr 0.081
f_dihedral_angle_d 11.051
f_angle_d 1.06
f_bond_d 0.006
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 4756
Nucleic Acid Atoms 0
Heterogen Atoms 48
Solvent Atoms 502

Software

Computing
Computing Package Purpose
MXCuBE Data Collection
MOSFLM Data Reduction (intensity integration)
SCALA Data Reduction (data scaling)
MOLREP Structure Solution
PHENIX (phenix.refine: 1.7.2_869) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: 1.7.2_869) refinement
MOLREP model building
MXCuBE data collection