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X-RAY DIFFRACTION
Materials and Methods page
4I4Q
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 6.5
    Temperature 293.0
    Details 0.1 M sodium cacodylate, 0.2 magnesium acetate, 20% PEG8000, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 77.74 α = 90
    b = 77.74 β = 90
    c = 52.77 γ = 120
     
    Space Group
    Space Group Name:    P 32 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 210
    Collection Date 2011-06-22
     
    Diffraction Radiation
    Monochromator Diamond(001)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ESRF BEAMLINE ID14-1
    Wavelength List 1.00000
    Site ESRF
    Beamline ID14-1
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 1.0
    Observed Criterion Sigma(I) 1.0
    Resolution(High) 1.51
    Resolution(Low) 16.83
    Number Reflections(All) 29039
    Number Reflections(Observed) 29039
    Percent Possible(Observed) 96.8
    R Merge I(Observed) 0.075
    B(Isotropic) From Wilson Plot 16.6
    Redundancy 5.2
     
    High Resolution Shell Details
    Resolution(High) 1.51
    Resolution(Low) 1.56
    Percent Possible(All) 89.5
    R Merge I(Observed) 0.262
    Mean I Over Sigma(Observed) 1.3
    Redundancy 4.7
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.51
    Resolution(Low) 16.832
    Cut-off Sigma(F) 1.36
    Number of Reflections(all) 28987
    Number of Reflections(Observed) 28987
    Number of Reflections(R-Free) 1467
    Percent Reflections(Observed) 99.34
    R-Factor(Observed) 0.1892
    R-Work 0.1879
    R-Free 0.2152
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Anisotropic B[1][1] -0.1529
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -0.1529
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 0.3059
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.51
    Shell Resolution(Low) 1.564
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 2605
    R-Factor(R-Work) 0.3997
    R-Factor(R-Free) 0.4317
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.564
    Shell Resolution(Low) 1.6265
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 2729
    R-Factor(R-Work) 0.2749
    R-Factor(R-Free) 0.2927
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6265
    Shell Resolution(Low) 1.7005
    Number of Reflections(R-Free) 158
    Number of Reflections(R-Work) 2736
    R-Factor(R-Work) 0.2075
    R-Factor(R-Free) 0.2124
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7005
    Shell Resolution(Low) 1.79
    Number of Reflections(R-Free) 129
    Number of Reflections(R-Work) 2747
    R-Factor(R-Work) 0.1653
    R-Factor(R-Free) 0.1925
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.79
    Shell Resolution(Low) 1.9021
    Number of Reflections(R-Free) 148
    Number of Reflections(R-Work) 2763
    R-Factor(R-Work) 0.1485
    R-Factor(R-Free) 0.2068
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9021
    Shell Resolution(Low) 2.0487
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 2763
    R-Factor(R-Work) 0.1526
    R-Factor(R-Free) 0.1755
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0487
    Shell Resolution(Low) 2.2544
    Number of Reflections(R-Free) 165
    Number of Reflections(R-Work) 2729
    R-Factor(R-Work) 0.1551
    R-Factor(R-Free) 0.1696
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2544
    Shell Resolution(Low) 2.5796
    Number of Reflections(R-Free) 152
    Number of Reflections(R-Work) 2778
    R-Factor(R-Work) 0.1715
    R-Factor(R-Free) 0.1862
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5796
    Shell Resolution(Low) 3.2462
    Number of Reflections(R-Free) 150
    Number of Reflections(R-Work) 2813
    R-Factor(R-Work) 0.1699
    R-Factor(R-Free) 0.1743
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2462
    Shell Resolution(Low) 16.8331
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 2857
    R-Factor(R-Work) 0.2109
    R-Factor(R-Free) 0.2766
    Percent Reflections(Observed) 98.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.006
    f_chiral_restr 0.081
    f_dihedral_angle_d 10.921
    f_angle_d 1.127
    f_bond_d 0.006
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1179
    Nucleic Acid Atoms 0
    Heterogen Atoms 18
    Solvent Atoms 168
     
     
  •   Software and Computing Hide
    Computing
    Data Collection MXCuBE
    Data Reduction (intensity integration) MOSFLM
    Data Reduction (data scaling) SCALA
    Structure Solution MOLREP
    Structure Refinement PHENIX (phenix.refine: 1.7.2_869)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.7.2_869)
    model building MOLREP
    data collection MXCuBE