X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 8.5
Temperature 293.0
Details 0.1 M Tris-HCl, 0.2 M magnesium chloride, 25% PEG4000, 0.2 M 1-butyl-3-methylimidazolium chloride, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 41.58 α = 90
b = 66.58 β = 90
c = 105.05 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 210 -- 2011-06-22
Diffraction Radiation
Monochromator Protocol
Diamond(001) SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ESRF BEAMLINE ID14-1 0.93340 ESRF ID14-1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.28 30 93.5 0.062 -- -- 6.5 70848 70848 1.0 1.0 9.7
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.279 1.35 86.5 0.279 -- 6.1 6.4 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
SIRAS 1.279 19.845 -- 1.35 70848 70792 3564 93.01 -- 0.1676 0.1666 0.185 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.279 1.2965 -- 118 2246 0.2018 0.228 -- 78.0
X Ray Diffraction 1.2965 1.315 -- 122 2532 0.2091 0.2403 -- 88.0
X Ray Diffraction 1.315 1.3347 -- 131 2511 0.1965 0.2541 -- 88.0
X Ray Diffraction 1.3347 1.3555 -- 144 2512 0.1797 0.2033 -- 89.0
X Ray Diffraction 1.3555 1.3777 -- 133 2559 0.1754 0.1999 -- 89.0
X Ray Diffraction 1.3777 1.4015 -- 137 2524 0.1719 0.2089 -- 89.0
X Ray Diffraction 1.4015 1.427 -- 118 2562 0.1645 0.1865 -- 89.0
X Ray Diffraction 1.427 1.4544 -- 133 2561 0.1574 0.224 -- 90.0
X Ray Diffraction 1.4544 1.4841 -- 135 2565 0.159 0.175 -- 89.0
X Ray Diffraction 1.4841 1.5163 -- 139 2582 0.1493 0.1794 -- 91.0
X Ray Diffraction 1.5163 1.5516 -- 117 2584 0.1509 0.1739 -- 90.0
X Ray Diffraction 1.5516 1.5904 -- 145 2621 0.1498 0.1809 -- 91.0
X Ray Diffraction 1.5904 1.6334 -- 153 2636 0.1557 0.1685 -- 93.0
X Ray Diffraction 1.6334 1.6814 -- 133 2724 0.1546 0.173 -- 94.0
X Ray Diffraction 1.6814 1.7356 -- 168 2719 0.1562 0.1608 -- 95.0
X Ray Diffraction 1.7356 1.7976 -- 142 2767 0.1551 0.1677 -- 96.0
X Ray Diffraction 1.7976 1.8696 -- 153 2803 0.1572 0.1802 -- 97.0
X Ray Diffraction 1.8696 1.9546 -- 143 2810 0.1613 0.161 -- 98.0
X Ray Diffraction 1.9546 2.0575 -- 167 2832 0.1601 0.1797 -- 98.0
X Ray Diffraction 2.0575 2.1863 -- 158 2876 0.1616 0.1997 -- 98.0
X Ray Diffraction 2.1863 2.3548 -- 157 2855 0.1696 0.2054 -- 99.0
X Ray Diffraction 2.3548 2.5914 -- 142 2908 0.1709 0.1947 -- 99.0
X Ray Diffraction 2.5914 2.9653 -- 157 2927 0.1855 0.1769 -- 99.0
X Ray Diffraction 2.9653 3.7318 -- 165 2940 0.1649 0.1871 -- 99.0
X Ray Diffraction 3.7318 19.8474 -- 154 3072 0.1697 0.1699 -- 98.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] 0.1351
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -0.1521
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 0.017
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.006
f_chiral_restr 0.084
f_dihedral_angle_d 10.674
f_angle_d 1.128
f_bond_d 0.006
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2378
Nucleic Acid Atoms 0
Heterogen Atoms 32
Solvent Atoms 412

Software

Computing
Computing Package Purpose
MXCuBE Data Collection
MOSFLM Data Reduction (intensity integration)
SCALA Data Reduction (data scaling)
SHARP Structure Solution
PHENIX (phenix.refine: 1.7.2_869) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: 1.7.2_869) refinement
SHARP model building
MXCuBE data collection