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X-RAY DIFFRACTION
Materials and Methods page
4I33
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 6
    Temperature 291.0
    Details 3M NaCl, 0.1M Na Citrate pH6, 2.5% T-butanol, 20mM OBG, 5mM DTT, 3mM sodium azide , pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 93.53 α = 90
    b = 93.53 β = 90
    c = 81.45 γ = 120
     
    Space Group
    Space Group Name:    P 61
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector IMAGE PLATE
    Type MAR scanner 345 mm plate
    Details VariMax-HF
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source ROTATING ANODE
    Type RIGAKU FR-E SUPERBRIGHT
    Wavelength List 1.5418
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 1.9
    Resolution(Low) 57.43
    Number Reflections(All) 31939
    Number Reflections(Observed) 31524
    Percent Possible(Observed) 98.7
    R Merge I(Observed) 0.066
    Redundancy 7.13
     
    High Resolution Shell Details
    Resolution(High) 1.9
    Resolution(Low) 1.97
    Percent Possible(All) 98.7
    R Merge I(Observed) 0.472
    Mean I Over Sigma(Observed) 3.0
    Redundancy 6.96
    Number Unique Reflections(All) 3173
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.9001
    Resolution(Low) 36.263
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 31261
    Number of Reflections(R-Free) 1572
    Percent Reflections(Observed) 97.87
    R-Factor(Observed) 0.2176
    R-Work 0.2158
    R-Free 0.2508
     
    Temperature Factor Modeling
    Anisotropic B[1][1] -5.0639
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -5.0639
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 10.1277
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9001
    Shell Resolution(Low) 1.9614
    Number of Reflections(R-Free) 126
    Number of Reflections(R-Work) 2632
    R-Factor(R-Work) 0.3
    R-Factor(R-Free) 0.3587
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9614
    Shell Resolution(Low) 2.0315
    Number of Reflections(R-Free) 129
    Number of Reflections(R-Work) 2713
    R-Factor(R-Work) 0.2546
    R-Factor(R-Free) 0.3244
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0315
    Shell Resolution(Low) 2.1128
    Number of Reflections(R-Free) 147
    Number of Reflections(R-Work) 2695
    R-Factor(R-Work) 0.2354
    R-Factor(R-Free) 0.3208
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1128
    Shell Resolution(Low) 2.209
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 2751
    R-Factor(R-Work) 0.2341
    R-Factor(R-Free) 0.2765
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.209
    Shell Resolution(Low) 2.3254
    Number of Reflections(R-Free) 127
    Number of Reflections(R-Work) 2731
    R-Factor(R-Work) 0.2323
    R-Factor(R-Free) 0.2898
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3254
    Shell Resolution(Low) 2.4711
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 2742
    R-Factor(R-Work) 0.2349
    R-Factor(R-Free) 0.265
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4711
    Shell Resolution(Low) 2.6618
    Number of Reflections(R-Free) 155
    Number of Reflections(R-Work) 2732
    R-Factor(R-Work) 0.2408
    R-Factor(R-Free) 0.2823
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6618
    Shell Resolution(Low) 2.9296
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 2740
    R-Factor(R-Work) 0.229
    R-Factor(R-Free) 0.2829
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9296
    Shell Resolution(Low) 3.3532
    Number of Reflections(R-Free) 167
    Number of Reflections(R-Work) 2688
    R-Factor(R-Work) 0.2142
    R-Factor(R-Free) 0.2655
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.3532
    Shell Resolution(Low) 4.2237
    Number of Reflections(R-Free) 157
    Number of Reflections(R-Work) 2613
    R-Factor(R-Work) 0.1946
    R-Factor(R-Free) 0.219
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.2237
    Shell Resolution(Low) 36.2696
    Number of Reflections(R-Free) 130
    Number of Reflections(R-Work) 2652
    R-Factor(R-Work) 0.2027
    R-Factor(R-Free) 0.22
    Percent Reflections(Observed) 94.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.006
    f_chiral_restr 0.083
    f_dihedral_angle_d 15.031
    f_angle_d 1.299
    f_bond_d 0.007
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2830
    Nucleic Acid Atoms 0
    Heterogen Atoms 118
    Solvent Atoms 125
     
     
  •   Software and Computing Hide
    Computing
    Data Collection MAR345dtb
    Data Reduction (intensity integration) d*TREK
    Data Reduction (data scaling) d*TREK
    Structure Solution PHENIX
    Structure Refinement PHENIX (phenix.refine: 1.7_650)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.7_650)
    model building PHENIX
    data collection MAR345dtb